View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20885_low_70 (Length: 235)

Name: NF20885_low_70
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20885_low_70
NF20885_low_70
[»] chr8 (8 HSPs)
chr8 (1-230)||(26414275-26414511)
chr8 (1-46)||(36912831-36912876)
chr8 (1-45)||(8449798-8449842)
chr8 (1-45)||(35101661-35101705)
chr8 (1-45)||(43617992-43618036)
chr8 (1-46)||(13817314-13817359)
chr8 (1-46)||(18029110-18029155)
chr8 (10-46)||(27392739-27392775)
[»] chr4 (9 HSPs)
chr4 (152-231)||(1329766-1329846)
chr4 (1-46)||(7401442-7401487)
chr4 (1-45)||(2212108-2212152)
chr4 (1-45)||(27141973-27142017)
chr4 (1-45)||(46914302-46914346)
chr4 (4-46)||(19409745-19409787)
chr4 (1-46)||(21654615-21654660)
chr4 (1-46)||(36658705-36658750)
chr4 (1-46)||(53181244-53181289)
[»] chr7 (5 HSPs)
chr7 (1-46)||(33379548-33379593)
chr7 (1-46)||(24793693-24793738)
chr7 (1-45)||(5813542-5813586)
chr7 (1-46)||(22194491-22194536)
chr7 (1-46)||(30630399-30630444)
[»] chr5 (5 HSPs)
chr5 (1-46)||(21367851-21367896)
chr5 (1-46)||(4580272-4580317)
chr5 (1-46)||(25033451-25033496)
chr5 (1-46)||(31011842-31011887)
chr5 (1-46)||(41263694-41263739)
[»] chr3 (12 HSPs)
chr3 (1-46)||(49086400-49086445)
chr3 (1-45)||(5844784-5844828)
chr3 (1-45)||(17469680-17469724)
chr3 (1-45)||(47147537-47147581)
chr3 (1-46)||(25450246-25450291)
chr3 (1-46)||(25787521-25787566)
chr3 (1-46)||(25829478-25829523)
chr3 (1-46)||(30688667-30688712)
chr3 (1-46)||(33751575-33751620)
chr3 (1-46)||(33936450-33936495)
chr3 (1-46)||(42598176-42598221)
chr3 (1-46)||(50034552-50034597)
[»] chr2 (7 HSPs)
chr2 (1-46)||(31185050-31185095)
chr2 (1-46)||(31204776-31204821)
chr2 (1-46)||(37245917-37245962)
chr2 (1-45)||(4296415-4296459)
chr2 (1-45)||(8855263-8855307)
chr2 (1-46)||(12858154-12858199)
chr2 (1-46)||(30819430-30819475)
[»] chr6 (7 HSPs)
chr6 (1-45)||(198090-198134)
chr6 (1-45)||(2503609-2503653)
chr6 (1-45)||(34328664-34328708)
chr6 (1-46)||(634945-634990)
chr6 (1-46)||(6377243-6377288)
chr6 (1-46)||(17958111-17958156)
chr6 (1-46)||(29951839-29951884)
[»] chr1 (5 HSPs)
chr1 (1-45)||(27630104-27630148)
chr1 (1-45)||(31471452-31471496)
chr1 (1-45)||(37419988-37420032)
chr1 (1-45)||(37646200-37646244)
chr1 (1-46)||(45242315-45242360)
[»] scaffold0758 (1 HSPs)
scaffold0758 (1-46)||(6481-6526)


Alignment Details
Target: chr8 (Bit Score: 166; Significance: 6e-89; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 26414511 - 26414275
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaacacacataaacgtgcat----gcattcaatctagagttaaatannnnnnnn---ctt 93  Q
    ||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||    ||||||||||||||||||||||           |||    
T  26414511 atcttattttcaacgaaatggatcccaataattaccatttcaacacacataaacgtgcatacatgcattcaatctagagttaaatatttttttttttctt 26414412  T
Q  94 ctgtaatgccatatcgacaaaggtttcttctcgcgcaatagacataaacgtgtagcaaaacatgctttaacacttttgcaatctgtatggacaatctgtt 193  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26414411 ctgtaatgccatatcgacaaaggtttcttctcgcgcaataaacataaacgtgtagcaaaacatgctttaacacttttgcaatctgtatggacaatctgtt 26414312  T
Q  194 gatatcacgactgaatgataccgtcgttgctccttct 230  Q
    |||||||||||||||||||||||||||||||||||||    
T  26414311 gatatcacgactgaatgataccgtcgttgctccttct 26414275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 36912876 - 36912831
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaacac 46  Q
    |||||||||| ||||||||||||||||||||| || ||||||||||    
T  36912876 atcttatttttagtgaaatggatcccaataataaccatttcaacac 36912831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 8449798 - 8449842
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaaca 45  Q
    |||||||||| ||||||||||||||||||||| || |||||||||    
T  8449798 atcttatttttagtgaaatggatcccaataataaccatttcaaca 8449842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 35101705 - 35101661
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaaca 45  Q
    |||||||||| ||||||||||||||||||||| || |||||||||    
T  35101705 atcttatttttagtgaaatggatcccaataataaccatttcaaca 35101661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 43617992 - 43618036
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaaca 45  Q
    |||||||||| ||||||||||||||||||||| || |||||||||    
T  43617992 atcttatttttagtgaaatggatcccaataataaccatttcaaca 43618036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 13817359 - 13817314
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaacac 46  Q
    ||||||||||  |||||||||||||||||||| || ||||||||||    
T  13817359 atcttattttttgtgaaatggatcccaataataaccatttcaacac 13817314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 18029110 - 18029155
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaacac 46  Q
    |||||||||| ||||||||||||| ||||||| || ||||||||||    
T  18029110 atcttatttttagtgaaatggatctcaataataaccatttcaacac 18029155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 27392775 - 27392739
Alignment:
Q  10 tcagtgaaatggatcccaataattacaatttcaacac 46  Q
    ||||||||||||||||||||||| || ||||||||||    
T  27392775 tcagtgaaatggatcccaataataaccatttcaacac 27392739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 231
Target Start/End: Original strand, 1329766 - 1329846
Alignment:
Q  152 aacatgctt-taacacttttgcaatctgtatggacaatctgttgatatcacgactgaatgataccgtcgttgctccttctg 231  Q
    ||||||||| ||||||||||||||  ||||| ||||| |||||||||||||||| |||||| || ||||||||| ||||||    
T  1329766 aacatgcttgtaacacttttgcaaattgtattgacaaactgttgatatcacgaccgaatgacactgtcgttgctacttctg 1329846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 7401487 - 7401442
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaacac 46  Q
    |||||||||| ||||||||||||||||||||| || ||||||||||    
T  7401487 atcttatttttagtgaaatggatcccaataataaccatttcaacac 7401442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 2212108 - 2212152
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaaca 45  Q
    |||||||||| ||||||||||||||||||||| || |||||||||    
T  2212108 atcttatttttagtgaaatggatcccaataataaccatttcaaca 2212152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 27141973 - 27142017
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaaca 45  Q
    |||||||||| ||||||||||||||||||||| || |||||||||    
T  27141973 atcttatttttagtgaaatggatcccaataataaccatttcaaca 27142017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 46914302 - 46914346
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaaca 45  Q
    |||||||||| ||||||||||||||||||||| || |||||||||    
T  46914302 atcttatttttagtgaaatggatcccaataataaccatttcaaca 46914346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 19409787 - 19409745
Alignment:
Q  4 ttattttcagtgaaatggatcccaataattacaatttcaacac 46  Q
    ||||||| ||||||||||||||||||||| || ||||||||||    
T  19409787 ttatttttagtgaaatggatcccaataataaccatttcaacac 19409745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 21654615 - 21654660
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaacac 46  Q
    ||||||||||  |||||||||||||||||||| || ||||||||||    
T  21654615 atcttattttttgtgaaatggatcccaataataaccatttcaacac 21654660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 36658750 - 36658705
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaacac 46  Q
    |||||||||| ||||||||||||| ||||||| || ||||||||||    
T  36658750 atcttatttttagtgaaatggatcgcaataataaccatttcaacac 36658705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 53181244 - 53181289
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaacac 46  Q
    ||||||||||  |||||||||||||||||||| || ||||||||||    
T  53181244 atcttattttttgtgaaatggatcccaataataaccatttcaacac 53181289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 33379593 - 33379548
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaacac 46  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||    
T  33379593 atcttatttttagtgaaatggatcccaataataacaatttcaacac 33379548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 24793738 - 24793693
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaacac 46  Q
    |||||||||| ||||||||||||||||||||| || ||||||||||    
T  24793738 atcttatttttagtgaaatggatcccaataataaccatttcaacac 24793693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 5813586 - 5813542
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaaca 45  Q
    |||||||||| ||||||||||||||||||||| || |||||||||    
T  5813586 atcttatttttagtgaaatggatcccaataataaccatttcaaca 5813542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 22194536 - 22194491
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaacac 46  Q
    ||||||||||  |||||||||||||||||||| || ||||||||||    
T  22194536 atcttattttttgtgaaatggatcccaataataaccatttcaacac 22194491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 30630399 - 30630444
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaacac 46  Q
    ||||||||||  |||||||||||||||||||| || ||||||||||    
T  30630399 atcttattttttgtgaaatggatcccaataataaccatttcaacac 30630444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 21367896 - 21367851
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaacac 46  Q
    |||||||||| ||||||||||||||||||||| || ||||||||||    
T  21367896 atcttatttttagtgaaatggatcccaataataaccatttcaacac 21367851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 4580317 - 4580272
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaacac 46  Q
    ||||||||||  |||||||||||||||||||| || ||||||||||    
T  4580317 atcttattttttgtgaaatggatcccaataataaccatttcaacac 4580272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 25033496 - 25033451
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaacac 46  Q
    |||||||||  ||||||||||||||||||||| || ||||||||||    
T  25033496 atcttatttctagtgaaatggatcccaataataaccatttcaacac 25033451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 31011842 - 31011887
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaacac 46  Q
    ||||||||||  |||||||||||||||||||| || ||||||||||    
T  31011842 atcttattttttgtgaaatggatcccaataataaccatttcaacac 31011887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 41263739 - 41263694
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaacac 46  Q
    |||||||||| ||| ||||||||||||||||| || ||||||||||    
T  41263739 atcttatttttagttaaatggatcccaataataaccatttcaacac 41263694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 49086445 - 49086400
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaacac 46  Q
    |||||||||| ||||||||||||||||||||| || ||||||||||    
T  49086445 atcttatttttagtgaaatggatcccaataataaccatttcaacac 49086400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 5844784 - 5844828
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaaca 45  Q
    |||||||||| ||||||||||||||||||||| || |||||||||    
T  5844784 atcttatttttagtgaaatggatcccaataataaccatttcaaca 5844828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 17469724 - 17469680
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaaca 45  Q
    |||||||||| ||||||||||||||||||||| || |||||||||    
T  17469724 atcttatttttagtgaaatggatcccaataataaccatttcaaca 17469680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 47147581 - 47147537
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaaca 45  Q
    |||||||||| ||||||||||||||||||||| || |||||||||    
T  47147581 atcttatttttagtgaaatggatcccaataataaccatttcaaca 47147537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 25450246 - 25450291
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaacac 46  Q
    |||||||||| ||||||||||||||||||||| |  ||||||||||    
T  25450246 atcttatttttagtgaaatggatcccaataataatcatttcaacac 25450291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 25787521 - 25787566
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaacac 46  Q
    ||||||||||  |||||||||||||||||||| || ||||||||||    
T  25787521 atcttattttttgtgaaatggatcccaataataaccatttcaacac 25787566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 25829478 - 25829523
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaacac 46  Q
    ||||||||||  |||||||||||||||||||| || ||||||||||    
T  25829478 atcttattttttgtgaaatggatcccaataataaccatttcaacac 25829523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 30688667 - 30688712
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaacac 46  Q
    |||||||||| | ||||||||||||||||||| || ||||||||||    
T  30688667 atcttatttttaatgaaatggatcccaataataaccatttcaacac 30688712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 33751620 - 33751575
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaacac 46  Q
    ||||||||||  |||||||||||||||||||| || ||||||||||    
T  33751620 atcttattttttgtgaaatggatcccaataataaccatttcaacac 33751575  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 33936495 - 33936450
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaacac 46  Q
    ||||||||||  |||||||||||||||||||| || ||||||||||    
T  33936495 atcttattttttgtgaaatggatcccaataataaccatttcaacac 33936450  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 42598176 - 42598221
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaacac 46  Q
    ||||||||||  |||||||||||||||||||| || ||||||||||    
T  42598176 atcttattttttgtgaaatggatcccaataataaccatttcaacac 42598221  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 50034597 - 50034552
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaacac 46  Q
    |||||||||| ||| ||||||||||||||||| || ||||||||||    
T  50034597 atcttatttttagttaaatggatcccaataataaccatttcaacac 50034552  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 31185050 - 31185095
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaacac 46  Q
    |||||||||| ||||||||||||||||||||| || ||||||||||    
T  31185050 atcttatttttagtgaaatggatcccaataataaccatttcaacac 31185095  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 31204776 - 31204821
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaacac 46  Q
    |||||||||| ||||||||||||||||||||| || ||||||||||    
T  31204776 atcttatttttagtgaaatggatcccaataataaccatttcaacac 31204821  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 37245962 - 37245917
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaacac 46  Q
    |||||||||| ||||||||||||||||||||| || ||||||||||    
T  37245962 atcttatttttagtgaaatggatcccaataataaccatttcaacac 37245917  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 4296415 - 4296459
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaaca 45  Q
    |||||||||| ||||||||||||||||||||| || |||||||||    
T  4296415 atcttatttttagtgaaatggatcccaataataaccatttcaaca 4296459  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 8855307 - 8855263
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaaca 45  Q
    |||||||||| ||||||||||||||||||||| || |||||||||    
T  8855307 atcttatttttagtgaaatggatcccaataataaccatttcaaca 8855263  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 12858199 - 12858154
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaacac 46  Q
    ||||||||||  |||||||||||||||||||| || ||||||||||    
T  12858199 atcttattttttgtgaaatggatcccaataataaccatttcaacac 12858154  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 30819430 - 30819475
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaacac 46  Q
    ||||||||||  |||||||||||||||||||| || ||||||||||    
T  30819430 atcttattttttgtgaaatggatcccaataataaccatttcaacac 30819475  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 198134 - 198090
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaaca 45  Q
    |||||||||| ||||||||||||||||||||| || |||||||||    
T  198134 atcttatttttagtgaaatggatcccaataataaccatttcaaca 198090  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 2503653 - 2503609
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaaca 45  Q
    |||||||||| ||||||||||||||||||||| || |||||||||    
T  2503653 atcttatttttagtgaaatggatcccaataataaccatttcaaca 2503609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 34328708 - 34328664
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaaca 45  Q
    |||||||||| ||||||||||||||||||||| || |||||||||    
T  34328708 atcttatttttagtgaaatggatcccaataataaccatttcaaca 34328664  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 634990 - 634945
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaacac 46  Q
    ||||||||||  |||||||||||||||||||| || ||||||||||    
T  634990 atcttattttttgtgaaatggatcccaataataaccatttcaacac 634945  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 6377243 - 6377288
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaacac 46  Q
    ||||||||||  |||||||||||||||||||| || ||||||||||    
T  6377243 atcttattttttgtgaaatggatcccaataataaccatttcaacac 6377288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 17958111 - 17958156
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaacac 46  Q
    ||||||||||  |||||||||||||||||||| || ||||||||||    
T  17958111 atcttattttttgtgaaatggatcccaataataaccatttcaacac 17958156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 29951839 - 29951884
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaacac 46  Q
    ||||||||||  |||||||||||||||||||| || ||||||||||    
T  29951839 atcttattttttgtgaaatggatcccaataataactatttcaacac 29951884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 27630104 - 27630148
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaaca 45  Q
    |||||||||| ||||||||||||||||||||| || |||||||||    
T  27630104 atcttatttttagtgaaatggatcccaataataaccatttcaaca 27630148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 31471496 - 31471452
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaaca 45  Q
    |||||||||| ||||||||||||||||||||| || |||||||||    
T  31471496 atcttatttttagtgaaatggatcccaataataaccatttcaaca 31471452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 37419988 - 37420032
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaaca 45  Q
    |||||||||| ||||||||||||||||||||| || |||||||||    
T  37419988 atcttatttttagtgaaatggatcccaataataaccatttcaaca 37420032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 37646200 - 37646244
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaaca 45  Q
    |||||||||| ||||||||||||||||||||| || |||||||||    
T  37646200 atcttatttttagtgaaatggatcccaataataaccatttcaaca 37646244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 45242360 - 45242315
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaacac 46  Q
    ||||||||||  |||||||||||||||||||| || ||||||||||    
T  45242360 atcttattttttgtgaaatggatcccaataataaccatttcaacac 45242315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0758 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 6481 - 6526
Alignment:
Q  1 atcttattttcagtgaaatggatcccaataattacaatttcaacac 46  Q
    |||||||||| ||||||||||||||||||||| |  ||||||||||    
T  6481 atcttatttttagtgaaatggatcccaataataaacatttcaacac 6526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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