View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20885_low_71 (Length: 233)
Name: NF20885_low_71
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_low_71 |
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| [»] chr7 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (5 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 7478108 - 7477876
Alignment:
| Q |
1 |
gattgcaactggcagaatgtgatgtaatatattcaaaggcagtgcaatgggaacaatggtactcatcaaatgagtagaatggtcttgagtatcacgcagt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7478108 |
gattgcaactggcagaatgtgatgcaatatattcaaaggcagtgcaatgggaacaatggtactcatcaaatgagtagaatggtcttgagtatcacacagt |
7478009 |
T |
|
| Q |
101 |
atatgatttggaaggaaaggaatgccagaagatttcaggacatacatcaatcggttcaggagatccttaatcaaattaagaagattgtctacattagtgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7478008 |
atatgatttggaaggaaaggaatgccagaagatttcagaacatacatcaatcggttcaggagatccttaatcaaattaagaagattgtctacattagtgg |
7477909 |
T |
|
| Q |
201 |
gttgaaatctaaaaagatgaagagtctaatgtt |
233 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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|
| T |
7477908 |
gttgaaatctaaaaagatgaagagtctaatgtt |
7477876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 223
Target Start/End: Complemental strand, 7317303 - 7317145
Alignment:
| Q |
65 |
atcaaatgagtagaatggtcttgagtatcacgcagtatatgatttggaaggaaaggaatgccagaagatttcaggacatacatcaatcggttcaggagat |
164 |
Q |
| |
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||||| ||||||||||| |||||| | || ||||||||||||||||| ||||| |||||||||| |||||| | || |||| | | ||||||| | |
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| T |
7317303 |
atcaattgagtagaatgacgttgagtgtaacccagtatatgatttggaaagaaagaaatgccagaatatttcataaaatttatcagttagctcaggagct |
7317204 |
T |
|
| Q |
165 |
ccttaatcaaattaagaagattgtctacattagtgggttgaaatctaaaaagatgaaga |
223 |
Q |
| |
|
|||| | ||||| || |||||||||||||||| || |||||| |||| ||||||||| |
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|
| T |
7317203 |
ccttcaccaaatcaaagagattgtctacattagaggtttgaaaactaatcagatgaaga |
7317145 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 1946434 - 1946202
Alignment:
| Q |
1 |
gattgcaactggcagaatgtgatgtaatatattcaaaggcagtgcaatgggaacaatggtactcatcaaatgagtagaatggtcttgagtatcacgcagt |
100 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1946434 |
gattgcaactggcagagtgtgatgcaatatattcaaaggcaacgcaatgggaacaatggtactcatcaaatgagtagaatggtcttgagtatcacgcagt |
1946335 |
T |
|
| Q |
101 |
atatgatttggaaggaaaggaatgccagaagatttcaggacatacatcaatcggttcaggagatccttaatcaaattaagaagattgtctacattagtgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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|
| T |
1946334 |
atatgatttggaaggaaaggaatgccagaagatttcaggacatacatcaatcggttcaggagctccttaatcaaattaagaagattgtttacattagtgg |
1946235 |
T |
|
| Q |
201 |
gttgaaatctaaaaagatgaagagtctaatgtt |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
1946234 |
gttgaaatctaaaaagatgaagagtctaatgtt |
1946202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 1161523 - 1161754
Alignment:
| Q |
1 |
gattgcaactggcagaatgtgatgtaatatattcaaaggcagtgcaatgggaacaatggtactcatcaaatgagtagaatggtcttgagtatcacgcagt |
100 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1161523 |
gattgcaactggcataatgtgatgcaatatattcaaaggcagtgcaatgg-aacaatggtactcatcaaatgagtagaatggtcttgagtatcacgcaat |
1161621 |
T |
|
| Q |
101 |
atatgatttggaaggaaaggaatgccagaagatttcaggacatacatcaatcggttcaggagatccttaatcaaattaagaagattgtctacattagtgg |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
1161622 |
atatgattttgaaggaaaggaatgccagaagatttcaggacatacatcaatcggttcaggagctccttaatcaaattaagaagattgtctacattagcgg |
1161721 |
T |
|
| Q |
201 |
gttgaaatctaaaaagatgaagagtctaatgtt |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
1161722 |
gttgaaatctaaaaagatgaagagtctaatgtt |
1161754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 47361614 - 47361846
Alignment:
| Q |
1 |
gattgcaactggcagaatgtgatgtaatatattcaaaggcagtgcaatgggaacaatggtactcatcaaatgagtagaatggtcttgagtatcacgcagt |
100 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
47361614 |
gattgcaactggcagagtgtgatgcaatatattcaaaggcagtgcaatgggaacaatgatactcatcaaatgagtagaattgtcttgagtatcacgcagt |
47361713 |
T |
|
| Q |
101 |
atatgatttggaaggaaaggaatgccagaagatttcaggacatacatcaatcggttcaggagatccttaatcaaattaagaagattgtctacattagtgg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||| || ||||||||||| |
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| T |
47361714 |
atatgatttggaaggaaaggaatgccagaagatttcaggacatacattaatcggttcagaagctccttaatcaaattaagaagatcgtttacattagtgg |
47361813 |
T |
|
| Q |
201 |
gttgaaatctaaaaagatgaagagtctaatgtt |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
47361814 |
gttgaaatctaaaaagatgaagagtctaatgtt |
47361846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 208
Target Start/End: Original strand, 579512 - 579717
Alignment:
| Q |
3 |
ttgcaactggcagaatgtgatgtaatatattcaaaggcagtgcaatgggaacaatggtactcatcaaatgagtagaatggtcttgagtatcacgcagtat |
102 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||| | || | ||| ||||| | |||||||||| ||| | ||||||||||||||| ||||||||| |
|
|
| T |
579512 |
ttgcaactggcagactgtgatgcaatatattcaatgtcaatacaacacgaacactagtactcatcatgtgaacaaaatggtcttgagtattacgcagtat |
579611 |
T |
|
| Q |
103 |
atgatttggaaggaaaggaatgccagaagatttcaggacatacatcaatcggttcaggagatccttaatcaaattaagaagattgtctacattagtgggt |
202 |
Q |
| |
|
| |||||| ||| ||| |||||| |||||||||||| |||| || ||||| |||||||| ||||||| ||| | | |||||||| ||||||||||||| |
|
|
| T |
579612 |
aagatttgtaagaaaatgaatgctagaagatttcagcacattcaccaatcagttcaggaactccttaaccaagtcacaaagattgtttacattagtgggt |
579711 |
T |
|
| Q |
203 |
tgaaat |
208 |
Q |
| |
|
|||||| |
|
|
| T |
579712 |
tgaaat |
579717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 52657373 - 52657269
Alignment:
| Q |
5 |
gcaactggcagaatgtgatgtaatatattcaaaggcagtgcaatgggaacaatggtactcatcaaatgagtagaatggtcttgagtatcacgcagtatat |
104 |
Q |
| |
|
|||||||||||| ||||||| | ||||||||||| || ||||| || |||||||||||||| |||||||||||||| |||||| || |||||||| |
|
|
| T |
52657373 |
gcaactggcagattgtgatgcattatattcaaagtcaatgcaacaaaaataatggtactcatcacatgagtagaatggtgttgagtgaaactcagtatat |
52657274 |
T |
|
| Q |
105 |
gattt |
109 |
Q |
| |
|
||||| |
|
|
| T |
52657273 |
gattt |
52657269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 52662256 - 52662207
Alignment:
| Q |
182 |
agattgtctacattagtgggttgaaatctaaaaagatgaagagtctaatg |
231 |
Q |
| |
|
||||||| ||||||||||||||||||| ||| ||||||||||| |||||| |
|
|
| T |
52662256 |
agattgtttacattagtgggttgaaatgtaagaagatgaagagcctaatg |
52662207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 124
Target Start/End: Complemental strand, 52662365 - 52662295
Alignment:
| Q |
54 |
caatggtactcatcaaatgagtagaatggtcttgagtatcacgcagtatatgatttggaaggaaaggaatg |
124 |
Q |
| |
|
||||||||||||||| |||||||||||| | |||||| | || |||||| ||||||||| ||||||||| |
|
|
| T |
52662365 |
caatggtactcatcacatgagtagaatgatgttgagtgtaacttggtatattatttggaagtaaaggaatg |
52662295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 19176680 - 19176900
Alignment:
| Q |
18 |
tgtgatgtaatatattcaaaggcagtgcaatgggaa-caatgg--tactcatcaaatgagtagaatggtcttgagtatcacgcagtatatgatttggaag |
114 |
Q |
| |
|
||||||| ||||||||||||| ||||||||| |||| ||| | ||||||||| |||||||||||||| |||||| |||| || | ||||||||||| |
|
|
| T |
19176680 |
tgtgatgcaatatattcaaagtcagtgcaataggaaacaacagagtactcatcacatgagtagaatggttttgagtgtcactcaatgtatgatttggaga |
19176779 |
T |
|
| Q |
115 |
gaaaggaatgccagaagatttcaggacatacatcaatcggttcaggagatccttaatcaaattaagaagattgtctacattagtgggttgaaatcta--a |
212 |
Q |
| |
|
|||||||||| |||||||||||| | || |||||||| ||| | ||| ||||||| ||||| || ||||| || |||||| |||| |||||||||| | |
|
|
| T |
19176780 |
gaaaggaatgttagaagatttcagtaaattcatcaatcagtttacgagctccttaaccaaatcaaaaagatagtttacatttgtggtttgaaatctaaga |
19176879 |
T |
|
| Q |
213 |
aaagatgaagagtctaatgtt |
233 |
Q |
| |
|
|||||||||||| ||||||| |
|
|
| T |
19176880 |
aaagatgaagaggttaatgtt |
19176900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 164 - 233
Target Start/End: Complemental strand, 51806426 - 51806357
Alignment:
| Q |
164 |
tccttaatcaaattaagaagattgtctacattagtgggttgaaatctaaaaagatgaagagtctaatgtt |
233 |
Q |
| |
|
||||||| ||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51806426 |
tccttaaacaaatcaaaaagattgtttacattagtgggttgaaatctaaaaagatgaagagtctaatgtt |
51806357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 31928834 - 31928724
Alignment:
| Q |
17 |
atgtgatgtaatatattcaaaggcagtgcaatgggaacaatggtactcatcaaatgagtagaatggtcttgagtatcacgcagtatatgatttggaagga |
116 |
Q |
| |
|
|||||||| ||||||||||| | || ||||| ||||||| | || |||||| ||||||||||| |||||| | || |||||||||||||||| || |
|
|
| T |
31928834 |
atgtgatgcaatatattcaatgtcaatgcaacaggaacaacgctatacatcaattgagtagaatgacgttgagtgtaaccgagtatatgatttggaaaga |
31928735 |
T |
|
| Q |
117 |
aaggaatgcca |
127 |
Q |
| |
|
||||||||||| |
|
|
| T |
31928734 |
aaggaatgcca |
31928724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 10 - 223
Target Start/End: Original strand, 6839781 - 6839994
Alignment:
| Q |
10 |
tggcagaatgtgatgtaatatattcaaaggcagtgcaatgggaacaatggtactcatcaaatgagtagaatggtcttgagtatcacgcagtatatgattt |
109 |
Q |
| |
|
|||||| |||||||| |||||||| |||| || ||||| |||||| | ||| |||||| ||||||||||| |||||| | || ||||||||||||| |
|
|
| T |
6839781 |
tggcaggatgtgatgcaatatattgaaagtcaatgcaacaagaacaacgctacacatcaattgagtagaatgacgttgagtgtaacccagtatatgattt |
6839880 |
T |
|
| Q |
110 |
ggaaggaaaggaatgccagaagatttcaggacatacatcaatcggttcaggagatccttaatcaaattaagaagattgtctacattagtgggttgaaatc |
209 |
Q |
| |
|
|||| |||||||||||||||| |||||| | || ||||| || | ||||| | ||||| ||||| || |||| ||||||||||| || |||||| | |
|
|
| T |
6839881 |
ggaaagaaaggaatgccagaacttttcagaaaattcatcagtcagctcaggggctccttcgccaaatcaaagagatcgtctacattagaggtttgaaaac |
6839980 |
T |
|
| Q |
210 |
taaaaagatgaaga |
223 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
6839981 |
taatcagatgaaga |
6839994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 10715352 - 10715416
Alignment:
| Q |
50 |
ggaacaatggtactcatcaaatgagtagaatggtcttgagtatcacgcagtatatgatttggaag |
114 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||| ||||| ||| || || |||||||||||| |
|
|
| T |
10715352 |
ggaacaatgatactcatcaaatgagtataatggttttgagctacactcaataaatgatttggaag |
10715416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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