View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20885_low_74 (Length: 222)
Name: NF20885_low_74
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_low_74 |
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Alignment Details
Target: chr6 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 2047894 - 2047714
Alignment:
| Q |
20 |
aaatattaacaacatctaaccaattaggaagaatatattaattaattaaatgaatccaaaagtgctttactttattttttgggaagggg-acatgttcat |
118 |
Q |
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| T |
2047894 |
aaatattaacaatatctaaccaattaggaagaatatattaattaa----atgaatccaaaggagc----ctttatttttttggaagggggacatgttcat |
2047803 |
T |
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| Q |
119 |
cagattcttgtttaggggacatgttcatcagattgttggtaatgtataaaaccacagtaattactaattacttagaattttcaaataac |
207 |
Q |
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| T |
2047802 |
cagattgttgtttaggggacatgttcatcagattgttggtaatggataaaaccacagtaattactaattacttagaattttcaaataac |
2047714 |
T |
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