View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20885_low_76 (Length: 215)
Name: NF20885_low_76
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_low_76 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 5625609 - 5625414
Alignment:
| Q |
1 |
cagctttcatggcactttatgcttatgcatcagtattaatatgttgggtacttttatgttaccgtatggcttttggtgatgaactttttccattttgggg |
100 |
Q |
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| T |
5625609 |
cagctttcatggcactttatgcttatgcatcagtgctaatatgttgggttcttttatgttaccgtatggcttttggtgatgaactttttccattttgggg |
5625510 |
T |
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| Q |
101 |
taaaggtgcaccttcattaggtcaaaaatttcttacacatcaagcaaaagtacctgaaagcactcatttctttaagaatggtactgaagaagcttc |
196 |
Q |
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| T |
5625509 |
taaaggtgcaccttcattaggtcaaaaatttcttacacatcaagcaaaagtacctgaaagtactcatttctttaagaatggtactgaagaagcttc |
5625414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 25671401 - 25671268
Alignment:
| Q |
1 |
cagctttcatggcactttatgcttatgcatcagtattaatatgttgggtacttttatgttaccgtatggcttttggtgatgaactttttccattttgggg |
100 |
Q |
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|||||||||||||||| ||||||| |||| |||||||||| |||||||| ||| | ||| | ||||||||||||||||||||||| || || ||||| |
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| T |
25671401 |
cagctttcatggcactatatgcttttgcagcagtattaatctgttgggttcttgttgcttatagaatggcttttggtgatgaacttttacctttctgggg |
25671302 |
T |
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| Q |
101 |
taaaggtgcaccttcattaggtcaaaaatttctt |
134 |
Q |
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|||||||||||| | ||||| |||||||||||| |
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| T |
25671301 |
taaaggtgcaccggctttaggacaaaaatttctt |
25671268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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