View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20885_low_79 (Length: 210)
Name: NF20885_low_79
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_low_79 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 22 - 194
Target Start/End: Complemental strand, 5467881 - 5467709
Alignment:
| Q |
22 |
tcattctaacaacttcatttgcaaaagcaagcccgggaccaataccacaagtttttcctacatctatatctgcatgaagaggctcatgagcttcctccca |
121 |
Q |
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| T |
5467881 |
tcattctaacaacttcatttgcaaaagcaagcccgggaccaataccacaagtttttcctacatctatatctgcatgaagaggctcatgagcttcctccca |
5467782 |
T |
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| Q |
122 |
tttgagttttgtatttagctttaaaattgatgggtttggtttgcattctggtgggatattaccatcccatttt |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5467781 |
tttgagttttgtatttagctttaaaattgatgggtttggtttgcattccggtgggatattaccatcccatttt |
5467709 |
T |
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