View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20885_low_9 (Length: 513)
Name: NF20885_low_9
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 10550802 - 10551205
Alignment:
| Q |
1 |
ggaagtgagtttaaagctcttgtatttgagtacatgagaaatggaaacttagaaaattggttgcatcccacaactggaattacagatcaacccatatcac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10550802 |
ggaagtgagtttaaagctcttgtatttgagtacatgagaaatggaaacttagaaaattggttgcatcccacaactggaattacagatcaacccatatcac |
10550901 |
T |
|
| Q |
101 |
tgactcttgagcaaaggttaaatattattactgatgttgcgtcagcattttgttatcttcattacgaatgcgagcaacctgtcattcactgtgatttaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10550902 |
tgactcttgagcaaaggttaaatattattactgatgttgcgtcagcattttgttatcttcattacgaatgcgagcaacctgtcattcactgtgatttaaa |
10551001 |
T |
|
| Q |
201 |
gcctgaaaatattcttcttaatgacatcatggtagctcaagtgagtgattttgggttagcaaagttgctctcaagtgttggagtcgctctgacgcagagt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10551002 |
gcctgaaaatattcttcttaatgacatcatggtagctcaagtgagtgattttgggttagcaaagttgctctcaagtgttggagtcgctctgacgcagagt |
10551101 |
T |
|
| Q |
301 |
agcacaattggaataaaggggacaattggctatgcacccccaggtatgtcctgacattgttttattaagttgtaaaatttacaagtttcaagttttagct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
10551102 |
agcacaattggaataaaggggacaattggctatgcacctccaggtacgtcctgacattgttttattaagttgtaaaatttacgagtttcaagttttagct |
10551201 |
T |
|
| Q |
401 |
cttg |
404 |
Q |
| |
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|||| |
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|
| T |
10551202 |
cttg |
10551205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 19606044 - 19605988
Alignment:
| Q |
13 |
aaagctcttgtatttgagtacatgagaaatggaaacttagaaaattggttgcatccc |
69 |
Q |
| |
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|||||||| || |||||||||||||||||||||| ||||||| | |||||||||||| |
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|
| T |
19606044 |
aaagctctagtttttgagtacatgagaaatggaagcttagaacaatggttgcatccc |
19605988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 10740881 - 10740824
Alignment:
| Q |
10 |
tttaaagctcttgtatttgagtacatgagaaatggaaacttagaaaattggttgcatc |
67 |
Q |
| |
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|||||||||||||| ||||| ||||||| |||||||| ||||||| | |||||||||| |
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| T |
10740881 |
tttaaagctcttgtttttgattacatgaaaaatggaagcttagaacaatggttgcatc |
10740824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 10565054 - 10565112
Alignment:
| Q |
10 |
tttaaagctcttgtatttgagtacatgagaaatggaaacttagaaaattggttgcatcc |
68 |
Q |
| |
|
||||||||||| || ||||||||||||| |||||||| |||||| | ||||||||||| |
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|
| T |
10565054 |
tttaaagctctggtttttgagtacatgaaaaatggaagcttagatcaatggttgcatcc |
10565112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 10604779 - 10604837
Alignment:
| Q |
10 |
tttaaagctcttgtatttgagtacatgagaaatggaaacttagaaaattggttgcatcc |
68 |
Q |
| |
|
||||||||||| || ||||| ||||||| |||||||| ||||||| | ||||||||||| |
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|
| T |
10604779 |
tttaaagctctagtttttgattacatgaaaaatggaagcttagaacaatggttgcatcc |
10604837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 349
Target Start/End: Original strand, 10559222 - 10559271
Alignment:
| Q |
300 |
tagcacaattggaataaaggggacaattggctatgcacccccaggtatgt |
349 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||| || |||||||||| |
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|
| T |
10559222 |
tagcacaattggaataaaagggactgttggctatgctcctccaggtatgt |
10559271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 10717122 - 10717065
Alignment:
| Q |
10 |
tttaaagctcttgtatttgagtacatgagaaatggaaacttagaaaattggttgcatc |
67 |
Q |
| |
|
||||||||||| || ||||| ||||||| |||||||| ||||||| | |||||||||| |
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|
| T |
10717122 |
tttaaagctctagtttttgattacatgaaaaatggaagcttagaacaatggttgcatc |
10717065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 345
Target Start/End: Complemental strand, 19605754 - 19605709
Alignment:
| Q |
300 |
tagcacaattggaataaaggggacaattggctatgcacccccaggt |
345 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||| || |||||| |
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| T |
19605754 |
tagcacaattggaataaaagggaccattggctatgctcctccaggt |
19605709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 10611737 - 10611797
Alignment:
| Q |
10 |
tttaaagctcttgtatttgagtacatgagaaatggaaacttagaaaattggttgcatccca |
70 |
Q |
| |
|
|||||||| || || ||||| ||||||| |||||||| ||||||| | ||||||||||||| |
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|
| T |
10611737 |
tttaaagccctagtttttgattacatgaaaaatggaagcttagaacaatggttgcatccca |
10611797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 10 - 347
Target Start/End: Complemental strand, 31467344 - 31467007
Alignment:
| Q |
10 |
tttaaagctcttgtatttgagtacatgagaaatggaaacttagaaaattggttgcatcccacaactggaattacagatcaacccatatcactgactcttg |
109 |
Q |
| |
|
|||||||||||||| || |||||||||| ||| |||| |||||||| |||||||||||| ||| | |||| ||| || | | | || ||| ||| | |
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| T |
31467344 |
tttaaagctcttgttttcgagtacatgaaaaacggaagcttagaaagttggttgcatccagcaaaagaaattgcaggtccagaaaaaacattgaatctag |
31467245 |
T |
|
| Q |
110 |
agcaaaggttaaatattattactgatgttgcgtcagcattttgttatcttcattacgaatgcgagcaacctgtcattcactgtgatttaaagcctgaaaa |
209 |
Q |
| |
|
||||||||||||||||||| ||| ||||| || |||||| |||||||||| | ||||| |||||||||||||||| ||||||||||||||| || |
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| T |
31467244 |
cacaaaggttaaatattattattgacgttgcttcggcatttcattatcttcatcatgaatgtcagcaacctgtcattcattgtgatttaaagcctagcaa |
31467145 |
T |
|
| Q |
210 |
tattcttcttaatgacatcatggtagctcaagtgagtgattttgggttagcaaagttgctctcaagtgttggagtcgctctgacgcagagtagcacaatt |
309 |
Q |
| |
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|||||||| |||| ||||||||||| |||||||||||||| ||||||||||||| ||||| |||||||| | |||| ||| | ||| || || |
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|
| T |
31467144 |
cgttcttcttgatgattctatggtagctcatgtgagtgattttggcatagcaaagttgcttccaagtattggagtctcactgatgcaaaatagtactgtt |
31467045 |
T |
|
| Q |
310 |
ggaataaaggggacaattggctatgcacccccaggtat |
347 |
Q |
| |
|
|||||| | ||||||||||| ||||| || |||||||| |
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|
| T |
31467044 |
ggaatacaagggacaattggttatgctcctccaggtat |
31467007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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