View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20886_high_2 (Length: 505)

Name: NF20886_high_2
Description: NF20886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20886_high_2
NF20886_high_2
[»] chr7 (21 HSPs)
chr7 (18-431)||(35742780-35743193)
chr7 (51-292)||(35749175-35749425)
chr7 (432-480)||(725657-725705)
chr7 (432-480)||(44459427-44459475)
chr7 (431-480)||(4859570-4859619)
chr7 (432-480)||(46555615-46555663)
chr7 (432-471)||(5374616-5374655)
chr7 (434-480)||(20119874-20119920)
chr7 (432-480)||(16277697-16277745)
chr7 (432-480)||(41336117-41336165)
chr7 (433-480)||(41858677-41858724)
chr7 (177-215)||(35739703-35739741)
chr7 (431-471)||(9663731-9663771)
chr7 (432-480)||(48952300-48952348)
chr7 (431-473)||(28589733-28589775)
chr7 (441-471)||(48683073-48683103)
chr7 (434-471)||(17968440-17968477)
chr7 (432-473)||(33978695-33978736)
chr7 (432-465)||(48607762-48607795)
chr7 (432-480)||(40015808-40015856)
chr7 (431-471)||(41289701-41289740)
[»] chr3 (25 HSPs)
chr3 (432-490)||(37785253-37785311)
chr3 (434-480)||(44843363-44843409)
chr3 (431-480)||(4233213-4233262)
chr3 (432-473)||(37220278-37220319)
chr3 (431-480)||(50548659-50548708)
chr3 (432-480)||(6177376-6177424)
chr3 (432-480)||(13213286-13213334)
chr3 (432-480)||(22604711-22604759)
chr3 (432-480)||(30043656-30043704)
chr3 (430-480)||(53845124-53845174)
chr3 (432-480)||(15084736-15084784)
chr3 (432-480)||(23019678-23019726)
chr3 (436-480)||(40905999-40906043)
chr3 (427-471)||(51722996-51723040)
chr3 (434-473)||(45169817-45169856)
chr3 (432-473)||(8852322-8852363)
chr3 (435-480)||(11121075-11121120)
chr3 (432-480)||(27320852-27320900)
chr3 (436-471)||(3892857-3892892)
chr3 (437-480)||(27239227-27239270)
chr3 (445-480)||(37785292-37785327)
chr3 (433-471)||(40423500-40423538)
chr3 (432-480)||(2217871-2217919)
chr3 (433-473)||(41101505-41101545)
chr3 (432-480)||(42825855-42825903)
[»] chr1 (14 HSPs)
chr1 (423-485)||(33704394-33704456)
chr1 (430-479)||(30838873-30838922)
chr1 (432-480)||(36307652-36307700)
chr1 (432-469)||(21096641-21096678)
chr1 (432-480)||(10772541-10772589)
chr1 (431-471)||(51086565-51086605)
chr1 (433-471)||(35954226-35954264)
chr1 (431-471)||(25655664-25655704)
chr1 (432-471)||(29522087-29522126)
chr1 (430-480)||(31029890-31029940)
chr1 (427-473)||(44512560-44512606)
chr1 (434-479)||(7152718-7152762)
chr1 (432-473)||(24780868-24780909)
chr1 (432-480)||(30303112-30303159)
[»] chr8 (21 HSPs)
chr8 (92-229)||(40011146-40011283)
chr8 (432-480)||(15883588-15883636)
chr8 (431-480)||(27911880-27911929)
chr8 (431-480)||(27958299-27958348)
chr8 (424-480)||(18955085-18955141)
chr8 (432-480)||(25583777-25583825)
chr8 (432-480)||(17948669-17948717)
chr8 (432-471)||(3846499-3846538)
chr8 (436-479)||(4622916-4622959)
chr8 (432-471)||(6093182-6093221)
chr8 (434-473)||(17853454-17853493)
chr8 (430-480)||(2082445-2082495)
chr8 (431-480)||(23347310-23347359)
chr8 (431-480)||(44255952-44256001)
chr8 (432-480)||(276577-276625)
chr8 (432-480)||(639224-639272)
chr8 (432-480)||(825030-825078)
chr8 (423-454)||(3705296-3705327)
chr8 (432-471)||(38577225-38577264)
chr8 (445-479)||(38099286-38099320)
chr8 (177-222)||(10862282-10862327)
[»] chr6 (11 HSPs)
chr6 (431-480)||(11837811-11837860)
chr6 (432-480)||(14103784-14103832)
chr6 (432-480)||(23580078-23580126)
chr6 (429-471)||(24082988-24083030)
chr6 (431-480)||(17551041-17551090)
chr6 (440-480)||(4590035-4590075)
chr6 (432-480)||(27438205-27438253)
chr6 (431-480)||(27782258-27782307)
chr6 (432-471)||(12142879-12142918)
chr6 (430-471)||(24178616-24178657)
chr6 (432-480)||(11154847-11154895)
[»] chr5 (14 HSPs)
chr5 (431-480)||(39588252-39588301)
chr5 (431-480)||(42612416-42612465)
chr5 (432-480)||(745761-745809)
chr5 (432-480)||(27020241-27020289)
chr5 (432-471)||(37270239-37270278)
chr5 (430-480)||(12499211-12499261)
chr5 (432-480)||(9591605-9591653)
chr5 (432-480)||(37940149-37940197)
chr5 (432-471)||(34401510-34401549)
chr5 (432-480)||(19664757-19664805)
chr5 (119-222)||(16865344-16865447)
chr5 (432-471)||(31552323-31552362)
chr5 (243-273)||(16865281-16865311)
chr5 (432-473)||(825001-825042)
[»] chr2 (11 HSPs)
chr2 (431-480)||(77764-77813)
chr2 (431-480)||(38282428-38282477)
chr2 (432-480)||(3907070-3907118)
chr2 (432-480)||(14006215-14006263)
chr2 (432-471)||(2292516-2292555)
chr2 (432-471)||(15152371-15152410)
chr2 (434-471)||(28391976-28392013)
chr2 (432-465)||(37726098-37726131)
chr2 (432-471)||(4738437-4738476)
chr2 (428-471)||(15398804-15398847)
chr2 (432-471)||(27551771-27551810)
[»] scaffold0227 (1 HSPs)
scaffold0227 (109-229)||(3613-3733)
[»] chr4 (18 HSPs)
chr4 (430-480)||(41041625-41041675)
chr4 (432-473)||(20354264-20354305)
chr4 (432-473)||(23419496-23419537)
chr4 (432-480)||(4652786-4652834)
chr4 (432-480)||(7487061-7487109)
chr4 (431-473)||(17360960-17361002)
chr4 (432-473)||(54919226-54919267)
chr4 (431-471)||(16664481-16664521)
chr4 (432-480)||(17520113-17520160)
chr4 (432-471)||(31292792-31292831)
chr4 (432-471)||(50496321-50496360)
chr4 (433-471)||(34072854-34072892)
chr4 (431-471)||(13534755-13534795)
chr4 (432-480)||(20787224-20787271)
chr4 (432-471)||(35824323-35824362)
chr4 (429-480)||(52447196-52447247)
chr4 (440-473)||(43940415-43940448)
chr4 (432-480)||(46717533-46717580)
[»] scaffold0115 (1 HSPs)
scaffold0115 (434-479)||(20718-20763)
[»] scaffold0003 (1 HSPs)
scaffold0003 (432-480)||(49109-49157)


Alignment Details
Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 18 - 431
Target Start/End: Original strand, 35742780 - 35743193
Alignment:
Q  18 ataattttataagttactggatcttcgagatcttcgagatcctcgtactcttcaaaaaagtcctcactaaaccaaagtcgtggggctttagtccacttat 117  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35742780 ataattctataagttactggatcttcgagatcttcgagatcctcgtactcttcaaaaaagtcctcactaaaccaaagtcgtggggctttagtccacttat 35742879  T
Q  118 acctccactgtttagacaaaatactagtcccaactaggtctttgatgtccaagtgtgacaggatgccgtcaatgacattgcatggtaagtcactgattcg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35742880 acctccactgtttagacaaaatactagtcccaactaggtctttgatgtccaagtgtgacaggatgccgtcaatgacattgcatggtaagtcactgattcg 35742979  T
Q  218 atcaatttgatcctcttgatcggaaagagtcataagtgaactacaaattcaagcaagcagaagtgtaaatattacgatatgacttcaaaataccgatgca 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  35742980 atcaatttgatcctcttgatcggaaagagtcataagtgaactacaaattcaagcaagcagaagtgtaaatattacgatctgacttcaaaatactgatgca 35743079  T
Q  318 acacaagaaatatcagaagagtcaatgcaaaatctaactttgaatgccctaataataacaaatcatagtgatcaatcatgaatacaaaatctaactttga 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35743080 acacaagaaatatcagaagagtcaatgcaaaatctaactttgaatgccctaataataacaaatcatagtgatcaatcatgaatacaaaatctaactttga 35743179  T
Q  418 tgccctaataaaat 431  Q
    ||||||||||||||    
T  35743180 tgccctaataaaat 35743193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 51 - 292
Target Start/End: Original strand, 35749175 - 35749425
Alignment:
Q  51 tcgagatcctcgtactcttcaaaaaagtcctcactaaaccaaagtcgtggggctttagtccacttatacctccactgtttagacaaaatactagtcccaa 150  Q
    |||||||||| |||||| |||||| |||| |||| |||||||||| ||||||||  ||| ||| |||||||||| | ||| |||||||||||||||| ||    
T  35749175 tcgagatccttgtactcgtcaaaatagtcttcaccaaaccaaagttgtggggctgaagttcacatatacctccaattttttgacaaaatactagtcctaa 35749274  T
Q  151 ctaggtctttgatgtccaagtgtgacaggatgccgtcaatgacattgcatggtaagtcactgattcgatcaatttgat----------cctcttgatcgg 240  Q
    ||||||||||||||| |||| |||  |||||  | ||||| ||||| |||||||||||||||||||||||||| ||||          | ||||| |  |    
T  35749275 ctaggtctttgatgtacaagcgtgctaggatatcatcaataacattacatggtaagtcactgattcgatcaatgtgatcatgattggccttcttg-ttag 35749373  T
Q  241 aaagagtcataagtgaactacaaattcaagcaagcagaagtgtaaatattac 292  Q
    | |||||||||||  ||||||||||||||||||||| |||||||||||||||    
T  35749374 acagagtcataaggtaactacaaattcaagcaagcacaagtgtaaatattac 35749425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 725705 - 725657
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  725705 ggtgaggcctacgttaccctctcttgtttagagggtaatttaccctctc 725657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 44459475 - 44459427
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44459475 ggtgaggcctacgttaccctctcttgtttagagggtaatttaccctctc 44459427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 431 - 480
Target Start/End: Original strand, 4859570 - 4859619
Alignment:
Q  431 tggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  4859570 tggtgaggcctatgttaccctctcttgtttagagggtaatttaccctctc 4859619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 46555663 - 46555615
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||    
T  46555663 ggtgaagcttacgttaccctctcttgtttagagggtaatttatcctctc 46555615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 432 - 471
Target Start/End: Complemental strand, 5374655 - 5374616
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatt 471  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  5374655 ggtgaggcctacgttaccctctcttgtttagagggtaatt 5374616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 434 - 480
Target Start/End: Original strand, 20119874 - 20119920
Alignment:
Q  434 tgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||    
T  20119874 tgaggtctacgttaccctctcttgtttagagggtaatttaccctctc 20119920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 16277745 - 16277697
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    ||||| ||||||||||| |||||||||||||||||||||||| ||||||    
T  16277745 ggtgaagcctacgttactctctcttgtttagagggtaatttaccctctc 16277697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 41336117 - 41336165
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    ||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  41336117 ggtgaggtctatcttaccctctcttgtttagagggtaatttatcctctc 41336165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 433 - 480
Target Start/End: Complemental strand, 41858724 - 41858677
Alignment:
Q  433 gtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    ||||| |||| |||||||||||||||||||||||||||||| ||||||    
T  41858724 gtgagacctatgttaccctctcttgtttagagggtaatttaccctctc 41858677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 215
Target Start/End: Original strand, 35739703 - 35739741
Alignment:
Q  177 aggatgccgtcaatgacattgcatggtaagtcactgatt 215  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  35739703 aggatgccgtcaatggcattgcatggtaagtcactgatt 35739741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 431 - 471
Target Start/End: Complemental strand, 9663771 - 9663731
Alignment:
Q  431 tggtgaggcctacgttaccctctcttgtttagagggtaatt 471  Q
    ||||||||||||  |||||||||||||||||||||||||||    
T  9663771 tggtgaggcctatattaccctctcttgtttagagggtaatt 9663731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 48952348 - 48952300
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    |||||| |||||||||| |||||||||||| ||||||||||| ||||||    
T  48952348 ggtgagacctacgttactctctcttgtttatagggtaatttaccctctc 48952300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 431 - 473
Target Start/End: Complemental strand, 28589775 - 28589733
Alignment:
Q  431 tggtgaggcctacgttaccctctcttgtttagagggtaattta 473  Q
    ||||||| |||||||||| ||||||||||||||| ||||||||    
T  28589775 tggtgagacctacgttacactctcttgtttagagagtaattta 28589733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 471
Target Start/End: Original strand, 48683073 - 48683103
Alignment:
Q  441 tacgttaccctctcttgtttagagggtaatt 471  Q
    |||||||||||||||||||||||||||||||    
T  48683073 tacgttaccctctcttgtttagagggtaatt 48683103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 471
Target Start/End: Complemental strand, 17968477 - 17968440
Alignment:
Q  434 tgaggcctacgttaccctctcttgtttagagggtaatt 471  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  17968477 tgaggcctacgttatcctctcttatttagagggtaatt 17968440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 473
Target Start/End: Original strand, 33978695 - 33978736
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaattta 473  Q
    |||||||||||  ||||||||||||||||| |||||||||||    
T  33978695 ggtgaggcctagattaccctctcttgtttatagggtaattta 33978736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 465
Target Start/End: Complemental strand, 48607795 - 48607762
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagg 465  Q
    |||||||||||||||||||||| |||||||||||    
T  48607795 ggtgaggcctacgttaccctcttttgtttagagg 48607762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 40015856 - 40015808
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    ||||| ||||| |||||| ||| ||||||||||||||||||| ||||||    
T  40015856 ggtgaagcctaggttaccttcttttgtttagagggtaatttaccctctc 40015808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 471
Target Start/End: Complemental strand, 41289740 - 41289701
Alignment:
Q  431 tggtgaggcctacgttaccctctcttgtttagagggtaatt 471  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  41289740 tggtgaggcctacgttatcctctcttgtttag-gggtaatt 41289701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 432 - 490
Target Start/End: Original strand, 37785253 - 37785311
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctcttgtttagag 490  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  37785253 ggtgaggactacgttaccctctcttgtttagagggtaatttaccctctcttgtttagag 37785311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 434 - 480
Target Start/End: Complemental strand, 44843409 - 44843363
Alignment:
Q  434 tgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||    
T  44843409 tgaggcctacgttaccctctcttgtttagagggtaatttaccctctc 44843363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 431 - 480
Target Start/End: Complemental strand, 4233262 - 4233213
Alignment:
Q  431 tggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  4233262 tggtgaggcctaagttaccctctcttgtttagagggtaatttaccctctc 4233213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 432 - 473
Target Start/End: Complemental strand, 37220319 - 37220278
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaattta 473  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  37220319 ggtgaggcctacgttaccctctcttgtttagagggtaattta 37220278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 431 - 480
Target Start/End: Complemental strand, 50548708 - 50548659
Alignment:
Q  431 tggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  50548708 tggtgaggcctacgttaccctctcttgtttagatggtaatttatcatctc 50548659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 6177424 - 6177376
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  6177424 ggtgaggcctacgttacgctctcttgtttagagggtaatttaccctctc 6177376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 13213286 - 13213334
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  13213286 ggtgaggcctatgttaccctctcttgtttagagggtaatttaccctctc 13213334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 22604711 - 22604759
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  22604711 ggtgaagcctacgttaccctctcttgtttagagggtaatttaccctctc 22604759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 30043704 - 30043656
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  30043704 ggtgaggcctacattaccctctcttgtttagagggtaatttaccctctc 30043656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 430 - 480
Target Start/End: Original strand, 53845124 - 53845174
Alignment:
Q  430 atggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    |||||||||| |||||||||||||||| |||||||||||||||| ||||||    
T  53845124 atggtgaggcttacgttaccctctcttatttagagggtaatttaccctctc 53845174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 15084784 - 15084736
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    ||||||| |||||||| ||||||||||||||||||||||||| ||||||    
T  15084784 ggtgaggactacgttatcctctcttgtttagagggtaatttaccctctc 15084736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 23019678 - 23019726
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    ||||||||||||||||| ||||||| |||||||||||||||| ||||||    
T  23019678 ggtgaggcctacgttacactctcttatttagagggtaatttaccctctc 23019726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 436 - 480
Target Start/End: Original strand, 40905999 - 40906043
Alignment:
Q  436 aggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||    
T  40905999 aggcctacattaccctctcttgtttagagggtaatttaccctctc 40906043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 471
Target Start/End: Complemental strand, 51723040 - 51722996
Alignment:
Q  427 aaaatggtgaggcctacgttaccctctcttgtttagagggtaatt 471  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    
T  51723040 aaaatggtgaggcctacgttaccctttcttgtttagagagtaatt 51722996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 434 - 473
Target Start/End: Original strand, 45169817 - 45169856
Alignment:
Q  434 tgaggcctacgttaccctctcttgtttagagggtaattta 473  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  45169817 tgaggcctacgttaccctctcttttttagagggtaattta 45169856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 432 - 473
Target Start/End: Complemental strand, 8852363 - 8852322
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaattta 473  Q
    ||||||| |||||||||||||||||||||||||| |||||||    
T  8852363 ggtgaggactacgttaccctctcttgtttagaggataattta 8852322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 435 - 480
Target Start/End: Original strand, 11121075 - 11121120
Alignment:
Q  435 gaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    |||| ||| |||||||||||||||||||||||||||||| ||||||    
T  11121075 gaggactaggttaccctctcttgtttagagggtaatttaccctctc 11121120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 27320852 - 27320900
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    ||||| |||| ||||| ||||||||||||||||||||||||| ||||||    
T  27320852 ggtgaagcctgcgttatcctctcttgtttagagggtaatttaccctctc 27320900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 471
Target Start/End: Complemental strand, 3892892 - 3892857
Alignment:
Q  436 aggcctacgttaccctctcttgtttagagggtaatt 471  Q
    |||| |||||||||||||||||||||||||||||||    
T  3892892 aggcttacgttaccctctcttgtttagagggtaatt 3892857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 480
Target Start/End: Complemental strand, 27239270 - 27239227
Alignment:
Q  437 ggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    |||||| ||||||||| |||||||||||||||||||| ||||||    
T  27239270 ggcctaggttaccctcacttgtttagagggtaatttaccctctc 27239227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 480
Target Start/End: Original strand, 37785292 - 37785327
Alignment:
Q  445 ttaccctctcttgtttagagggtaatttatcctctc 480  Q
    ||||||||||||||||||||||||||||| ||||||    
T  37785292 ttaccctctcttgtttagagggtaatttaccctctc 37785327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 433 - 471
Target Start/End: Original strand, 40423500 - 40423538
Alignment:
Q  433 gtgaggcctacgttaccctctcttgtttagagggtaatt 471  Q
    ||||| ||||||||||||||||||||||||| |||||||    
T  40423500 gtgagacctacgttaccctctcttgtttagaaggtaatt 40423538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 2217871 - 2217919
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    |||||||||||| |||| ||||||| |||||| ||||||||| ||||||    
T  2217871 ggtgaggcctacattactctctcttatttagaaggtaatttaccctctc 2217919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 473
Target Start/End: Original strand, 41101505 - 41101545
Alignment:
Q  433 gtgaggcctacgttaccctctcttgtttagagggtaattta 473  Q
    |||||| ||||||||||||||||| |||||||| |||||||    
T  41101505 gtgaggtctacgttaccctctcttatttagaggataattta 41101545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 42825855 - 42825903
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    ||||||| ||| |||||  ||||||||||||||||||||||| ||||||    
T  42825855 ggtgaggtctatgttactatctcttgtttagagggtaatttaccctctc 42825903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 423 - 485
Target Start/End: Original strand, 33704394 - 33704456
Alignment:
Q  423 taataaaatggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctcttgtt 485  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||    
T  33704394 taataatatggtgaagcctacgttaccctctcttgtttagagggtaatttaccctctcatgtt 33704456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 430 - 479
Target Start/End: Complemental strand, 30838922 - 30838873
Alignment:
Q  430 atggtgaggcctacgttaccctctcttgtttagagggtaatttatcctct 479  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  30838922 atggtgaggcctacgttaccctctcttatttagagggtaatttaccctct 30838873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 36307652 - 36307700
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  36307652 ggtgaggtctatgttaccctctcttgtttagagggtaatttatcctctc 36307700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 432 - 469
Target Start/End: Original strand, 21096641 - 21096678
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaa 469  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21096641 ggtgaggcctacgttaccctctcttgtttagagggtaa 21096678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 10772541 - 10772589
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    ||||| |||||||||| ||||||||||||||||||||||||| ||||||    
T  10772541 ggtgaagcctacgttatcctctcttgtttagagggtaatttaccctctc 10772589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 431 - 471
Target Start/End: Original strand, 51086565 - 51086605
Alignment:
Q  431 tggtgaggcctacgttaccctctcttgtttagagggtaatt 471  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  51086565 tggtgaggcctacgttaccctctcttatttagagggtaatt 51086605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 471
Target Start/End: Original strand, 35954226 - 35954264
Alignment:
Q  433 gtgaggcctacgttaccctctcttgtttagagggtaatt 471  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  35954226 gtgaggcctatgttaccctctcttgtttagagggtaatt 35954264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 431 - 471
Target Start/End: Original strand, 25655664 - 25655704
Alignment:
Q  431 tggtgaggcctacgttaccctctcttgtttagagggtaatt 471  Q
    |||||||| |||||||||||| |||||||||||||||||||    
T  25655664 tggtgaggtctacgttaccctttcttgtttagagggtaatt 25655704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 471
Target Start/End: Complemental strand, 29522126 - 29522087
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatt 471  Q
    ||||||| ||| ||||||||||||||||||||||||||||    
T  29522126 ggtgaggtctaggttaccctctcttgtttagagggtaatt 29522087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 480
Target Start/End: Original strand, 31029890 - 31029940
Alignment:
Q  430 atggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    ||||||| | ||| |||| ||||||||||||||||||||||||| ||||||    
T  31029890 atggtgaagtctatgttatcctctcttgtttagagggtaatttaccctctc 31029940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 473
Target Start/End: Complemental strand, 44512606 - 44512560
Alignment:
Q  427 aaaatggtgaggcctacgttaccctctcttgtttagagggtaattta 473  Q
    |||| |||||||||||| |||| |||||||||||||||| |||||||    
T  44512606 aaaagggtgaggcctacattactctctcttgtttagaggttaattta 44512560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 479
Target Start/End: Original strand, 7152718 - 7152762
Alignment:
Q  434 tgaggcctacgttaccctctcttgtttagagggtaatttatcctct 479  Q
    |||||||||| ||||||||||||||||||| ||||||||| |||||    
T  7152718 tgaggcctacattaccctctcttgtttaga-ggtaatttaccctct 7152762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 473
Target Start/End: Original strand, 24780868 - 24780909
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaattta 473  Q
    |||||||| ||| ||||||| |||||||||||||||||||||    
T  24780868 ggtgaggcatactttaccctatcttgtttagagggtaattta 24780909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 30303159 - 30303112
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    |||||| |||||||||||||||||||||||| || ||| ||||||||||    
T  30303159 ggtgagacctacgttaccctctcttgtttaggggataa-ttatcctctc 30303112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 92 - 229
Target Start/End: Original strand, 40011146 - 40011283
Alignment:
Q  92 aagtcgtggggctttagtccacttatacctccactgtttagacaaaatactagtcccaactaggtctttgatgtccaagtgtgacaggatgccgtcaatg 191  Q
    |||||||||| || || ||||| |||||||||||| | |||||| || ||||||||  |||||||||  |  || |||||||   |||||||| || |||    
T  40011146 aagtcgtgggactgtaatccacatatacctccactttctagacagaacactagtcctcactaggtctcgggcgttcaagtgttctaggatgccatcgatg 40011245  T
Q  192 acattgcatggtaagtcactgattcgatcaatttgatc 229  Q
    ||||| | |||||||||||||||||||||||| |||||    
T  40011246 acattacttggtaagtcactgattcgatcaatgtgatc 40011283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 15883636 - 15883588
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15883636 ggtgaggcctacgttactctctcttgtttagagggtaatttatcctctc 15883588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 431 - 480
Target Start/End: Original strand, 27911880 - 27911929
Alignment:
Q  431 tggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  27911880 tggtgaggactacgttaccctctcttgtttagagggtaatttaccctctc 27911929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 431 - 480
Target Start/End: Original strand, 27958299 - 27958348
Alignment:
Q  431 tggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  27958299 tggtgaggactacgttaccctctcttgtttagagggtaatttaccctctc 27958348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 424 - 480
Target Start/End: Original strand, 18955085 - 18955141
Alignment:
Q  424 aataaaatggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    ||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||    
T  18955085 aataaaacggtgaggcctaagttacactctcttgcttagagggtaatttatcctctc 18955141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 25583825 - 25583777
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  25583825 ggtgaggcctatgttaccctctcttgtttagagggtaatttaccctctc 25583777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 17948717 - 17948669
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    |||||||  ||| ||||||||||||||||||||||||||||||||||||    
T  17948717 ggtgaggtttacattaccctctcttgtttagagggtaatttatcctctc 17948669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 432 - 471
Target Start/End: Original strand, 3846499 - 3846538
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatt 471  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  3846499 ggtgaggcctacgttacactctcttgtttagagggtaatt 3846538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 436 - 479
Target Start/End: Complemental strand, 4622959 - 4622916
Alignment:
Q  436 aggcctacgttaccctctcttgtttagagggtaatttatcctct 479  Q
    |||||||| ||||||||||||||||||||||||||||| |||||    
T  4622959 aggcctacattaccctctcttgtttagagggtaatttaccctct 4622916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 432 - 471
Target Start/End: Original strand, 6093182 - 6093221
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatt 471  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  6093182 ggtgagacctacgttaccctctcttgtttagagggtaatt 6093221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 434 - 473
Target Start/End: Complemental strand, 17853493 - 17853454
Alignment:
Q  434 tgaggcctacgttaccctctcttgtttagagggtaattta 473  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  17853493 tgaggtctacgttaccctctcttgtttagagggtaattta 17853454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 430 - 480
Target Start/End: Complemental strand, 2082495 - 2082445
Alignment:
Q  430 atggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    ||||||||||||||||||| ||||||||| ||||| |||||||| ||||||    
T  2082495 atggtgaggcctacgttacgctctcttgtatagagagtaatttaccctctc 2082445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 431 - 480
Target Start/End: Complemental strand, 23347359 - 23347310
Alignment:
Q  431 tggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    ||||||||| ||  ||||||||||||||||| ||||||||||||||||||    
T  23347359 tggtgaggcatatcttaccctctcttgtttaaagggtaatttatcctctc 23347310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 431 - 480
Target Start/End: Original strand, 44255952 - 44256001
Alignment:
Q  431 tggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    |||||||||||| ||||||||||||| |||||||| ||||||| ||||||    
T  44255952 tggtgaggcctaggttaccctctcttatttagaggataatttaccctctc 44256001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 276577 - 276625
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    |||||| ||||| ||||||||||||||||| ||||||||||| ||||||    
T  276577 ggtgagacctacattaccctctcttgtttatagggtaatttaccctctc 276625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 639272 - 639224
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    |||||| ||||| ||||||||||||||||| ||||||||||| ||||||    
T  639272 ggtgagacctacattaccctctcttgtttatagggtaatttaccctctc 639224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 825078 - 825030
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    |||||| ||||| ||||||||||||||||| ||||||||||| ||||||    
T  825078 ggtgagacctacattaccctctcttgtttatagggtaatttaccctctc 825030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 454
Target Start/End: Complemental strand, 3705327 - 3705296
Alignment:
Q  423 taataaaatggtgaggcctacgttaccctctc 454  Q
    ||||||||||||||||||||||||||||||||    
T  3705327 taataaaatggtgaggcctacgttaccctctc 3705296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 471
Target Start/End: Complemental strand, 38577264 - 38577225
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatt 471  Q
    |||||||||||||||||||||| || ||||||||||||||    
T  38577264 ggtgaggcctacgttaccctcttttatttagagggtaatt 38577225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 445 - 479
Target Start/End: Complemental strand, 38099320 - 38099286
Alignment:
Q  445 ttaccctctcttgtttagagggtaatttatcctct 479  Q
    |||||||||||||||||||||||| ||||||||||    
T  38099320 ttaccctctcttgtttagagggtattttatcctct 38099286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 10862327 - 10862282
Alignment:
Q  177 aggatgccgtcaatgacattgcatggtaagtcactgattcgatcaa 222  Q
    |||||||| ||||||||||| |||||||||||||| |||| |||||    
T  10862327 aggatgccatcaatgacattacatggtaagtcactaattcaatcaa 10862282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 431 - 480
Target Start/End: Complemental strand, 11837860 - 11837811
Alignment:
Q  431 tggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11837860 tggtgaggcctacgttaccctctcttgtttagagggtaatttaccctctc 11837811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 14103784 - 14103832
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14103784 ggtgaggcctacgttaccctctcttgtttagagggtaatttaccctctc 14103832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 23580078 - 23580126
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  23580078 ggtgaggcctaccttaccctctcttgtttagagggtaatttaccctctc 23580126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 429 - 471
Target Start/End: Original strand, 24082988 - 24083030
Alignment:
Q  429 aatggtgaggcctacgttaccctctcttgtttagagggtaatt 471  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  24082988 aatggtgaggcctacgttaccctctcttatttagagggtaatt 24083030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 431 - 480
Target Start/End: Complemental strand, 17551090 - 17551041
Alignment:
Q  431 tggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    |||||| |||||||||||||||||||||||| ||||||||||| ||||||    
T  17551090 tggtgaagcctacgttaccctctcttgtttaaagggtaatttaccctctc 17551041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 440 - 480
Target Start/End: Complemental strand, 4590075 - 4590035
Alignment:
Q  440 ctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  4590075 ctacgttaccctctcttatttagagggtaatttatcctctc 4590035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 27438205 - 27438253
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    ||||||| ||| |||||||||||||||||||||||||||||||| ||||    
T  27438205 ggtgaggtctatgttaccctctcttgtttagagggtaatttatcttctc 27438253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 431 - 480
Target Start/End: Original strand, 27782258 - 27782307
Alignment:
Q  431 tggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    |||||| | ||| |||||||||||||||||||||||||||||| ||||||    
T  27782258 tggtgacgtctatgttaccctctcttgtttagagggtaatttaccctctc 27782307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 471
Target Start/End: Complemental strand, 12142918 - 12142879
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatt 471  Q
    ||||||||||||||||||||||||||||||| || |||||    
T  12142918 ggtgaggcctacgttaccctctcttgtttaggggataatt 12142879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 471
Target Start/End: Complemental strand, 24178657 - 24178616
Alignment:
Q  430 atggtgaggcctacgttaccctctcttgtttagagggtaatt 471  Q
    |||||||||  ||||||||||||| |||||||||||||||||    
T  24178657 atggtgaggtgtacgttaccctcttttgtttagagggtaatt 24178616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 11154895 - 11154847
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    ||||||| |||||||||||| |||| |||| ||||||||||| ||||||    
T  11154895 ggtgagggctacgttaccctttcttatttaaagggtaatttagcctctc 11154847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 431 - 480
Target Start/End: Original strand, 39588252 - 39588301
Alignment:
Q  431 tggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39588252 tggtgaggcttacgttaccctctcttgtttagagggtaatttatcctctc 39588301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 431 - 480
Target Start/End: Complemental strand, 42612465 - 42612416
Alignment:
Q  431 tggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  42612465 tggtgaggcctacgttaccctctcttgtttagagggtaatttaccctctc 42612416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 745809 - 745761
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  745809 ggtgaagcctacgttaccctctcttgtttagagggtaatttaccctctc 745761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 27020289 - 27020241
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  27020289 ggtgaggcctacattaccctctcttgtttagagggtaatttaccctctc 27020241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 432 - 471
Target Start/End: Original strand, 37270239 - 37270278
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatt 471  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  37270239 ggtgaggcctacgttaccctctcttgtttagagggtaatt 37270278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 430 - 480
Target Start/End: Original strand, 12499211 - 12499261
Alignment:
Q  430 atggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    ||||||||||||| |||||||||| ||||||||||||||||||| ||||||    
T  12499211 atggtgaggcctatgttaccctcttttgtttagagggtaatttaccctctc 12499261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 9591605 - 9591653
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    ||||||| |||| ||||||||||||||||||||||||||||| ||||||    
T  9591605 ggtgaggtctacattaccctctcttgtttagagggtaatttaccctctc 9591653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 37940197 - 37940149
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    ||||||| ||||||||| |||||||||||||||||||||||| ||||||    
T  37940197 ggtgaggtctacgttactctctcttgtttagagggtaatttaccctctc 37940149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 432 - 471
Target Start/End: Original strand, 34401510 - 34401549
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatt 471  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  34401510 ggtgaggtctacgttaccctctcttgtttagagggtaatt 34401549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 19664757 - 19664805
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    |||||||  ||||||||||||| ||||||||||||||||||| ||||||    
T  19664757 ggtgaggattacgttaccctctattgtttagagggtaatttaccctctc 19664805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 222
Target Start/End: Complemental strand, 16865447 - 16865344
Alignment:
Q  119 cctccactgtttagacaaaatactagtcccaactaggtctttgatgtccaagtgtgacaggatgccgtcaatgacattgcatggtaagtcactgattcga 218  Q
    |||||||| | |||| | |||||| |||| | ||||||||  ||||| || ||||   || ||||| ||||||||||| | |||||||||||||||||||    
T  16865447 cctccactttctagatagaatactggtcctagctaggtctcggatgttcaggtgttgtagaatgccatcaatgacattacttggtaagtcactgattcga 16865348  T
Q  219 tcaa 222  Q
    ||||    
T  16865347 tcaa 16865344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 471
Target Start/End: Complemental strand, 31552362 - 31552323
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatt 471  Q
    ||||||||||||||||||||||| ||||||||| ||||||    
T  31552362 ggtgaggcctacgttaccctctcctgtttagagagtaatt 31552323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 243 - 273
Target Start/End: Complemental strand, 16865311 - 16865281
Alignment:
Q  243 agagtcataagtgaactacaaattcaagcaa 273  Q
    |||||||||||||||||||||||||||||||    
T  16865311 agagtcataagtgaactacaaattcaagcaa 16865281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 473
Target Start/End: Complemental strand, 825042 - 825001
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaattta 473  Q
    |||||||  ||| |||||||||||||||||||||||||||||    
T  825042 ggtgaggtttaccttaccctctcttgtttagagggtaattta 825001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 431 - 480
Target Start/End: Complemental strand, 77813 - 77764
Alignment:
Q  431 tggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  77813 tggtgaggcctacgttaccctctcttgtttagaaggtaatttatcctctc 77764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 431 - 480
Target Start/End: Complemental strand, 38282477 - 38282428
Alignment:
Q  431 tggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  38282477 tggtgagacttacgttaccctctcttgtttagagggtaatttatcctctc 38282428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 3907118 - 3907070
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    |||||||||||| |||| |||||||||||||||||||||||| ||||||    
T  3907118 ggtgaggcctacattacactctcttgtttagagggtaatttaccctctc 3907070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 14006263 - 14006215
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    |||||||||||| ||||||||||||||| ||||||||||||| ||||||    
T  14006263 ggtgaggcctacattaccctctcttgttaagagggtaatttaccctctc 14006215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 432 - 471
Target Start/End: Complemental strand, 2292555 - 2292516
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatt 471  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  2292555 ggtgaggcctacgttatcctctcttgtttagagggtaatt 2292516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 432 - 471
Target Start/End: Original strand, 15152371 - 15152410
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatt 471  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  15152371 ggtgaggcttacgttaccctctcttgtttagagggtaatt 15152410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 434 - 471
Target Start/End: Complemental strand, 28392013 - 28391976
Alignment:
Q  434 tgaggcctacgttaccctctcttgtttagagggtaatt 471  Q
    |||||||||||||||||||||||||||||||| |||||    
T  28392013 tgaggcctacgttaccctctcttgtttagaggataatt 28391976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 432 - 465
Target Start/End: Complemental strand, 37726131 - 37726098
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagg 465  Q
    ||||||||||||||||||||||||||||||||||    
T  37726131 ggtgaggcctacgttaccctctcttgtttagagg 37726098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 471
Target Start/End: Complemental strand, 4738476 - 4738437
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatt 471  Q
    ||||| |||||||||||||| |||||||||||||||||||    
T  4738476 ggtgaagcctacgttaccctatcttgtttagagggtaatt 4738437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 471
Target Start/End: Original strand, 15398804 - 15398847
Alignment:
Q  428 aaatggtgaggcctacgttaccctctcttgtttagagggtaatt 471  Q
    |||||||||||||||||||| ||| | |||||||||||||||||    
T  15398804 aaatggtgaggcctacgttatcctttattgtttagagggtaatt 15398847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 471
Target Start/End: Complemental strand, 27551810 - 27551771
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatt 471  Q
    ||||||| ||| ||||||||||||||||||||||||||||    
T  27551810 ggtgaggtctatgttaccctctcttgtttagagggtaatt 27551771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 109 - 229
Target Start/End: Original strand, 3613 - 3733
Alignment:
Q  109 tccacttatacctccactgtttagacaaaatactagtcccaactaggtctttgatgtccaagtgtgacaggatgccgtcaatgacattgcatggtaagtc 208  Q
    ||||| |||||||||||| | |||||| || ||| || | |||||| ||||  |||| |||| ||   |||||||| ||||||||||| |||||||||||    
T  3613 tccacatatacctccactttctagacagaagactggtactaactagctcttgaatgttcaagcgttctaggatgccatcaatgacattacatggtaagtc 3712  T
Q  209 actgattcgatcaatttgatc 229  Q
    ||||||||||||||| |||||    
T  3713 actgattcgatcaatgtgatc 3733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 430 - 480
Target Start/End: Complemental strand, 41041675 - 41041625
Alignment:
Q  430 atggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  41041675 atggtgaggcctacattaccctctcttgtttagagggtaatttaccctctc 41041625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 432 - 473
Target Start/End: Complemental strand, 20354305 - 20354264
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaattta 473  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  20354305 ggtgaggcctacgttaccctctcttgtttagagggtaattta 20354264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 432 - 473
Target Start/End: Complemental strand, 23419537 - 23419496
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaattta 473  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  23419537 ggtgaggcctacgttaccctctcttgtttagagggtaattta 23419496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 4652786 - 4652834
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  4652786 ggtgaggcctacattaccctctcttgtttagagggtaatttaccctctc 4652834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 7487061 - 7487109
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  7487061 ggtgaggcctatgttaccctctcttgtttagagggtaatttaccctctc 7487109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 431 - 473
Target Start/End: Original strand, 17360960 - 17361002
Alignment:
Q  431 tggtgaggcctacgttaccctctcttgtttagagggtaattta 473  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  17360960 tggtgaggtctacgttaccctctcttgtttagagggtaattta 17361002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 432 - 473
Target Start/End: Original strand, 54919226 - 54919267
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaattta 473  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  54919226 ggtgaagcctacgttaccctctcttgtttagagggtaattta 54919267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 431 - 471
Target Start/End: Original strand, 16664481 - 16664521
Alignment:
Q  431 tggtgaggcctacgttaccctctcttgtttagagggtaatt 471  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  16664481 tggtgaggcctacgttaccctctcttgtttagaggataatt 16664521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 17520160 - 17520113
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  17520160 ggtgaggtctacgttaccctctcttgtttagagggtaa-ttatcctctc 17520113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 432 - 471
Target Start/End: Complemental strand, 31292831 - 31292792
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatt 471  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  31292831 ggtgagacctacgttaccctctcttgtttagagggtaatt 31292792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 432 - 471
Target Start/End: Complemental strand, 50496360 - 50496321
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatt 471  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  50496360 ggtgaggcctacgttaccctctcttgtttagggggtaatt 50496321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 471
Target Start/End: Original strand, 34072854 - 34072892
Alignment:
Q  433 gtgaggcctacgttaccctctcttgtttagagggtaatt 471  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  34072854 gtgaggtctacgttaccctctcttgtttagagggtaatt 34072892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 431 - 471
Target Start/End: Complemental strand, 13534795 - 13534755
Alignment:
Q  431 tggtgaggcctacgttaccctctcttgtttagagggtaatt 471  Q
    ||||||||||||  |||||||||||||||||||||||||||    
T  13534795 tggtgaggcctatattaccctctcttgtttagagggtaatt 13534755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 20787271 - 20787224
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    ||||||| |||||||||||||||||||||||| ||||||||| ||||||    
T  20787271 ggtgaggactacgttaccctctcttgtttaga-ggtaatttaccctctc 20787224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 471
Target Start/End: Original strand, 35824323 - 35824362
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatt 471  Q
    |||||||| |||||||||||||||||||||||| ||||||    
T  35824323 ggtgaggcatacgttaccctctcttgtttagagagtaatt 35824362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 480
Target Start/End: Original strand, 52447196 - 52447247
Alignment:
Q  429 aatggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    ||||||||||| ||| ||| |||||||| |||||||||||||||| ||||||    
T  52447196 aatggtgaggcttacattatcctctcttatttagagggtaatttaccctctc 52447247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 473
Target Start/End: Complemental strand, 43940448 - 43940415
Alignment:
Q  440 ctacgttaccctctcttgtttagagggtaattta 473  Q
    |||| |||||||||||||||||||||||||||||    
T  43940448 ctacattaccctctcttgtttagagggtaattta 43940415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 46717533 - 46717580
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    |||||| |||| |||||||||||||||||||| ||||||||||| ||||    
T  46717533 ggtgagacctatgttaccctctcttgtttaga-ggtaatttatcttctc 46717580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 434 - 479
Target Start/End: Original strand, 20718 - 20763
Alignment:
Q  434 tgaggcctacgttaccctctcttgtttagagggtaatttatcctct 479  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||    
T  20718 tgaggcctacgttaccctatcttgtttagagggtaatttaccctct 20763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 49157 - 49109
Alignment:
Q  432 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 480  Q
    ||||||| ||| |||||||||||||||||||||||||||||||| ||||    
T  49157 ggtgaggtctatgttaccctctcttgtttagagggtaatttatcttctc 49109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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