View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20887_high_2 (Length: 626)
Name: NF20887_high_2
Description: NF20887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20887_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-160; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 19 - 347
Target Start/End: Original strand, 5708921 - 5709244
Alignment:
| Q |
19 |
gtttcggctaaggttgcgcttccgccaaaaagtaagtttttggttgtttgtatga-agttgaagtaattgtagcttgtttttgaactttaagaacattga |
117 |
Q |
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| T |
5708921 |
gtttcagctaaggttgcgcttccgccaaaaagtaagtttttggttgtttgtatgatagttgaagtaattgtagcttgtttttgaactttaagaacattga |
5709020 |
T |
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| Q |
118 |
accacaaacacggacacatagacatcggtattgcaataagttaagaaaatgaaagcgattgaatgtgactgtgtcagtgtcagtgtcagacaccatcagt |
217 |
Q |
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| T |
5709021 |
accacaaacatggacacatagacatcggtattgcaataagttaagaaaatgaaagcgattgaatgtgact------gtgtcagtgtcagacaccatcagt |
5709114 |
T |
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| Q |
218 |
gctacactgtttaagaattattctcgtcagtaaaagtaagtatattctcgttgattatgcatgagccttatatcgtgttcacagtcagtcatgatccatg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5709115 |
gctacactgtttaagaattattctcgtcagtaaaagtaagtatattctcgttgattatgcatgagccttatatcgtggtcacagtcagtcatgatccatg |
5709214 |
T |
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| Q |
318 |
atattgcagaaaagtcttctcattacagaa |
347 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
5709215 |
atattgcagaaaagtcttctcattacagaa |
5709244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 342 - 626
Target Start/End: Complemental strand, 5709658 - 5709374
Alignment:
| Q |
342 |
acagaatcaagcttattgtacttgtataattttaatgattgcaacaaaggtaactaatgctaagtacttggaactcactgctgctcgcatttgattgagt |
441 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5709658 |
acagaatcaaacttattgtacttgtataattttaatgattgcaacaaaggtaactaatgctaagtacttggaactcactgctgctcgcatttgattgagt |
5709559 |
T |
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| Q |
442 |
cctccattgcatgaaaccataagataaccattattcttataaatccctgatgaaaagaattaacaaattcagctaatatccataagattcttattcttat |
541 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5709558 |
cctccattgcatgaaaccataagataaccattattcttataaatccctgatgaaaagaattaacaaattcagctaatatccataagattcttattcttat |
5709459 |
T |
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| Q |
542 |
cataagaagaaacaagctttttagtaaatatacacagggtttaaaaaaggaaaaggactgcgactgtgatttagacagcgacatt |
626 |
Q |
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| T |
5709458 |
cataagaagaaacaagctttttagtaaatatacacagggtttaaaaaaggaaaaggactgcgactgtgatttagacagcgacatt |
5709374 |
T |
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