View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20887_high_9 (Length: 259)
Name: NF20887_high_9
Description: NF20887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20887_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 53267770 - 53268001
Alignment:
| Q |
19 |
cttacaggtagatttaaatattattgataagcaacaaaatatcatgatctttcatgtaggtgccataaatagtcattacctacttc----cattgaacat |
114 |
Q |
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| T |
53267770 |
cttacaggtagatttaaatatt---gataagcaacaaaatatcatgatctttcatgtaggtgccataaatagtcattacctacttccttccattgaacac |
53267866 |
T |
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| Q |
115 |
attataaatttgatatgatgctcactagacacgtaaacatatttatttgatccaatcgttgagtttgttatttcagttctaatttaatcgaagatttttc |
214 |
Q |
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| T |
53267867 |
attataaatttgatatgatgctcactagacacgtaaacatatttatttgatccaatcgttgagtttgttatttcagttctaatttaatcgaagatttttc |
53267966 |
T |
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| Q |
215 |
taaacacatttgttgctatactatctgatcctttg |
249 |
Q |
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| T |
53267967 |
taaacacatttgttgctatactatctgatcctttg |
53268001 |
T |
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