View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20887_low_1 (Length: 632)
Name: NF20887_low_1
Description: NF20887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20887_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 3686757 - 3687101
Alignment:
| Q |
1 |
aagtgcaaacttgtattttgatgggaataatttggagattcattttaatattgtgtatgttacttgtaatattgtcataaaaaagtcaagtgttcctcgt |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3686757 |
aagtacaaacttgtattttgatgggaataatttggagattcattttaatattgtgtatgttacttgtaatattgtcataaaaaagtcaagtgttcctcgt |
3686856 |
T |
|
| Q |
101 |
caaattttcatcctctattatggatacatgtattgtgattaggcaatcaaataatctaaattactctaaattttaaaattaattatttaaatcagtcggg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3686857 |
caaattttcatcctctattatggatacatgtattgtgattaggcaatcaaataatctaaattactctaaattttaaaattaattatttaaatcagtcggg |
3686956 |
T |
|
| Q |
201 |
acacatttttgttattctacaactacatgactgttgtatacaac-nnnnnnnnnaaaaatatttagttattgtccaagtgtccaacacatacacaaataa |
299 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3686957 |
atacatttttgttattctacaactacatgactgttgtatacaacttttttttaaaaaaatatttagttattgtccaagtgcccaacacatacacaaataa |
3687056 |
T |
|
| Q |
300 |
atggggagggcgaaagggtatcatgtgatgaaacccaacactcaa |
344 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3687057 |
atagggagggcgaaagggtatcatgtgatgaaacccaacactcaa |
3687101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 372 - 616
Target Start/End: Original strand, 3687129 - 3687372
Alignment:
| Q |
372 |
cgagtgcaactaaatatatttgaaagttttgttttgaatatgttaacttcctattagcaaatatgataattgattagaaaatttgatggaactttaaaat |
471 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3687129 |
cgagtgcaactaaatatatttgaaagttttgttt-gaatatgttaacttcctattagcaaatatgataattgattagaaaatttgatggaactttaaaat |
3687227 |
T |
|
| Q |
472 |
tgaaacctttgaaatattttggcaataatttnnnnnnnnnnnnngtgaatgcatgtaaattctattttattttaaattgacttgttgataattaatcata |
571 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
3687228 |
tgaaacctttgaaatattttggcaataatttaaaaaaggaaaaagtgaatgcatataaattctattttattttgaatcgacttgttgataattaatcata |
3687327 |
T |
|
| Q |
572 |
cgcataacttttatagatcaacacaaaattattacaaattgtaag |
616 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3687328 |
cgcataacttttatagatcaacacaaaattattacaaattgtaag |
3687372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 123 - 243
Target Start/End: Original strand, 2537285 - 2537402
Alignment:
| Q |
123 |
gatacatgtattgtgattaggcaatcaaataatctaaattactctaaattttaaaattaattatttaaatcagtcgggacacatttttgttattctacaa |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| || |||| || ||| |||||| |||||| |||| |||||||||||||||||||||| |
|
|
| T |
2537285 |
gatacatgtattgtgattaggcaatcaaataatataaatttctaaaaatattcaaaataatta---aaatcaatcggtacacatttttgttattctacaa |
2537381 |
T |
|
| Q |
223 |
ctacatgactgttgtatacaa |
243 |
Q |
| |
|
|||||||||| |||||||||| |
|
|
| T |
2537382 |
ctacatgacttttgtatacaa |
2537402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 518 - 616
Target Start/End: Original strand, 2537888 - 2537987
Alignment:
| Q |
518 |
gaatgcatgtaaattctattttattttaaattg-acttgttgataattaatcatacgcataacttttatagatcaacacaaaattattacaaattgtaag |
616 |
Q |
| |
|
|||| ||| |||||| ||||||||||| ||| | |||| ||||||||||||||| ||||| ||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
2537888 |
gaatccatataaattttattttattttgaatagtactttttgataattaatcatgtgcatagcttttatggatcagcacaaaattattacaaattgtaag |
2537987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 495
Target Start/End: Original strand, 2537739 - 2537857
Alignment:
| Q |
378 |
caactaaatatatttgaaagttttgttttgaatatgttaacttcctattagcaaatatgata--attgattagaaaatttgatggaactttaaaattgaa |
475 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||||||| ||||||| ||| | ||| ||||| ||| |||||| ||| ||||||||||| |
|
|
| T |
2537739 |
caactaaatatatttgaaagttttg-tttgaatgtgttaacttgctattagtaaaaacaataatattgagtaggggttttgattgaagtttaaaattgat |
2537837 |
T |
|
| Q |
476 |
acctttgaaatattttggca |
495 |
Q |
| |
|
||| |||||||| ||||||| |
|
|
| T |
2537838 |
accattgaaatactttggca |
2537857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 3610038 - 3609954
Alignment:
| Q |
38 |
attcattttaatattgtgtatgttacttgtaatattgtcataaaaaagtcaagtgttcctcgtcaaattttcatcctctattatg |
122 |
Q |
| |
|
|||||| |||||| | |||| | ||||||||||||| |||||||| ||||| ||||||| | || ||||||||||| |||||| |
|
|
| T |
3610038 |
attcatgttaatactttgtaagatacttgtaatatttccataaaaatgtcaattgttccttattaatttttcatcctccattatg |
3609954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University