View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20887_low_11 (Length: 251)
Name: NF20887_low_11
Description: NF20887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20887_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 17718721 - 17718962
Alignment:
| Q |
1 |
tttgtttgacattttttatataagttcattatctgcatagttttataactgttcacatagaaaatttacttaattgatgaaaagttatttattctgaaaa |
100 |
Q |
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| T |
17718721 |
tttgtttgacattttttatattagttcattatctgcatagttttataactgttcacatagaaaatttacttaattgatgaaaagttatttattctgaaaa |
17718820 |
T |
|
| Q |
101 |
ttcatta-gctattaacatttgttatattgtcatttacgtacatgatgtgattaggtgcaatcaagtcgttgcatcaaattttataatcaagttgttgca |
199 |
Q |
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| T |
17718821 |
ttcattaagctattaacatttgttatatggtcatttacgtacatgatgtgactaggtgcattcaagtcgttgcatcaaattttataatcaagttgttgca |
17718920 |
T |
|
| Q |
200 |
tcaaatttttcattgaaatttagatgatagtgtatacctatg |
241 |
Q |
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| T |
17718921 |
tcaaatttttcattgaaatttagatgatagtgtatacctatg |
17718962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 16730778 - 16730920
Alignment:
| Q |
1 |
tttgtttgacattttttatataagttcattatctgcatagttttataactgttcaca-tagaaaatttac-----ttaattgatg-aaaagttatttatt |
93 |
Q |
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| T |
16730778 |
tttgtttgacaatttttatattaattcattatctgcatagttttataattgttcatattagaaaatttactttaatttattgatgaaaaaattatttatt |
16730877 |
T |
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| Q |
94 |
ctgaaaattcattagctattaacatttgttatattgtcattta |
136 |
Q |
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| T |
16730878 |
ctgaaaattcactagctagtaacatttgttatatggtcattta |
16730920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 17708912 - 17709054
Alignment:
| Q |
1 |
tttgtttgacattttttatataagttcattatctgcatagttttataactgttcaca-tagaaaatttac-----ttaattgatg-aaaagttatttatt |
93 |
Q |
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| T |
17708912 |
tttgtttgacaatttttatattaattcattatctgcatagttttataattgttcatattagaaaatttactttaatttattgatgaaaaaattatttatt |
17709011 |
T |
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| Q |
94 |
ctgaaaattcattagctattaacatttgttatattgtcattta |
136 |
Q |
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| T |
17709012 |
ctgaaaattcactagctagtaacatttgttatatggtcattta |
17709054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 137
Target Start/End: Original strand, 17736597 - 17736722
Alignment:
| Q |
13 |
tttttatataagttcattatctgcatagttttataactgttcacatagaaaatttacttaattgatg-aaaagttatttattctgaaaattcattagcta |
111 |
Q |
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| T |
17736597 |
tttttatattggttaattatctgcatagttttataactgttcatatttgaaatttactttattgatgaaaaagttatttatcgtgaaaattcactagcta |
17736696 |
T |
|
| Q |
112 |
ttaacatttgttatattgtcatttac |
137 |
Q |
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||||| |||||||| ||||||||| |
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| T |
17736697 |
gtaacaactgttatatggtcatttac |
17736722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 17737165 - 17737288
Alignment:
| Q |
1 |
tttgtttgacattttttatataagttcattatctgcatagttttataactgttcaca-tagaaaatttacttaattgatg-aaaagttatttattctgaa |
98 |
Q |
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||||||||||| ||||| ||| ||||||||||||||||||||||||||||| ||| | |||||||||||||| || |||| |||||||||||||| |||| |
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| T |
17737165 |
tttgtttgacaatttttctattagttcattatctgcatagttttataactg-tcatattagaaaatttactttatagatgaaaaagttatttattttgaa |
17737263 |
T |
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| Q |
99 |
aattcattagctattaacatttgtt |
123 |
Q |
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|||||| || ||| ||||| ||||| |
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| T |
17737264 |
aattcactaactagtaacagttgtt |
17737288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 16722835 - 16722945
Alignment:
| Q |
28 |
attatctgcatagttttataactgttcacatagaaaatttacttaattgatg-aaaagttatttattctgaaaattcattagctattaacatttgttata |
126 |
Q |
| |
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||||||||||||||||||||||| |||| || |||||||||| ||||||| ||||||||||||| |||||||||| |||||| ||||| ||||||| |
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| T |
16722835 |
attatctgcatagttttataactattcatatttgaaatttactttattgatgaaaaagttatttatcatgaaaattcactagctagtaacaactgttata |
16722934 |
T |
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| Q |
127 |
ttgtcatttac |
137 |
Q |
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| T |
16722935 |
tggtcatttac |
16722945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 17699849 - 17699959
Alignment:
| Q |
28 |
attatctgcatagttttataactgttcacatagaaaatttacttaattgatg-aaaagttatttattctgaaaattcattagctattaacatttgttata |
126 |
Q |
| |
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||||||||||||||||||||||| |||| || |||||||||| ||||||| ||||||||||||| |||||||||| |||||| ||||| ||||||| |
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| T |
17699849 |
attatctgcatagttttataactattcatatttgaaatttactttattgatgaaaaagttatttatcatgaaaattcactagctagtaacagctgttata |
17699948 |
T |
|
| Q |
127 |
ttgtcatttac |
137 |
Q |
| |
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| T |
17699949 |
tggtcatttac |
17699959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 228
Target Start/End: Original strand, 17714503 - 17714545
Alignment:
| Q |
185 |
aatcaagttgttgcatcaaatttttcattgaaatttagatgata |
228 |
Q |
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| T |
17714503 |
aatcaagttgttgcatcaaattttccattg-aatttagatgata |
17714545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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