View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20887_low_3 (Length: 458)

Name: NF20887_low_3
Description: NF20887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20887_low_3
NF20887_low_3
[»] chr7 (19 HSPs)
chr7 (3-444)||(24137272-24137713)
chr7 (3-444)||(24145008-24145449)
chr7 (104-444)||(24125705-24126045)
chr7 (5-274)||(24126111-24126380)
chr7 (291-445)||(24120897-24121051)
chr7 (345-446)||(24131362-24131463)
chr7 (288-446)||(24158419-24158577)
chr7 (288-443)||(24149991-24150146)
chr7 (295-420)||(24153185-24153310)
chr7 (6-159)||(24284887-24285040)
chr7 (8-152)||(24121199-24121343)
chr7 (9-177)||(24238929-24239097)
chr7 (1-102)||(24231753-24231854)
chr7 (289-432)||(24160068-24160211)
chr7 (1-138)||(3494048-3494185)
chr7 (1-134)||(24150294-24150427)
chr7 (313-381)||(24239353-24239421)
chr7 (6-153)||(21200367-21200514)
chr7 (122-178)||(24160343-24160399)
[»] chr1 (2 HSPs)
chr1 (283-443)||(15381320-15381480)
chr1 (47-132)||(15381087-15381172)


Alignment Details
Target: chr7 (Bit Score: 410; Significance: 0; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 3 - 444
Target Start/End: Complemental strand, 24137713 - 24137272
Alignment:
Q  3 aacagattttgtttgttgaagcagatgatgattttgctgatttagtttttagttttctcacttttcccttgggatcggtgttgcatattctccaaggatt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  24137713 aacagattttgtttgttgaagcagatgatgattttgctgatttggtttttagttttctcacttttcctttgggatcggtgttgcatattctccaaggatt 24137614  T
Q  103 ctcttttataagctgctttgataatttatataagagtgtgactgaattgagttcagacaagtgtttgaggtcacaacttatgaaagacagactatccatt 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  24137613 ctcttttataagctgctttgataatttatataagagtgtgactgaattgagttcagacaagtgtttgaggtcacaacttatgaaagacagactaaccatt 24137514  T
Q  203 ccaatgatttccatacaatctgaactcaggaaccagatactaccgatacctaaaaacaattataaggaaaaaagtatgtcatatcaatttgttgatccta 302  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24137513 ccaatgatttccatacaatctgaactcaggaaccagatattaccgatacctaaaaacaattataaggaaaaaagtatgtcatatcaatttgttgatccta 24137414  T
Q  303 aatcccctatttctggaggatatgctagagcaccattaacgtttatggtgacagacgaattggttgtgactccaatgtcatccattgatggtatttcata 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24137413 aatcccctatttctggaggatatgctagagcaccattaacgtttatggtgacagacgaattggttgtgactccaatgtcatccattgatggtatttcata 24137314  T
Q  403 tcttgaaagaatgaaggtctcacttaatgacgtggaggaaat 444  Q
    ||||||||||||||||||  | |||| |||||||||||||||    
T  24137313 tcttgaaagaatgaaggttccccttagtgacgtggaggaaat 24137272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 3 - 444
Target Start/End: Complemental strand, 24145449 - 24145008
Alignment:
Q  3 aacagattttgtttgttgaagcagatgatgattttgctgatttagtttttagttttctcacttttcccttgggatcggtgttgcatattctccaaggatt 102  Q
    ||||||||||||||||||||||||| || ||||| ||||| || |||||||||||||||||||| ||||| ||| | |||||||||| || |||||||||    
T  24145449 aacagattttgtttgttgaagcagaggaagatttcgctgacttcgtttttagttttctcactttccccttaggagcagtgttgcatactcgccaaggatt 24145350  T
Q  103 ctcttttataagctgctttgataatttatataagagtgtgactgaattgagttcagacaagtgtttgaggtcacaacttatgaaagacagactatccatt 202  Q
    ||||||| |||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| | ||||||| |||| ||| |    
T  24145349 ctcttttgtaagctgcattgataatttatacaagagcgtgactgaattgagttcagacaagtgtttgaggtcacagcttttcaaagacatactaaccagt 24145250  T
Q  203 ccaatgatttccatacaatctgaactcaggaaccagatactaccgatacctaaaaacaattataaggaaaaaagtatgtcatatcaatttgttgatccta 302  Q
    ||||  |||||    ||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||| || ||||||  ||||| |||||||||    
T  24145249 ccaaccatttctgctcaatctgaactcagacaccagatattaccgatacctaaaaacaattataaggaaaaaaatacgtcatacaaatttattgatccta 24145150  T
Q  303 aatcccctatttctggaggatatgctagagcaccattaacgtttatggtgacagacgaattggttgtgactccaatgtcatccattgatggtatttcata 402  Q
    |||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24145149 aatcccctatttctggtggatatgctggagcatcattaacgtttatggtgacagacgaattggttgtgactccaatgtcatccattgatggtatttcata 24145050  T
Q  403 tcttgaaagaatgaaggtctcacttaatgacgtggaggaaat 444  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  24145049 tcttgaaagaatgaaggtctcacttaatgacgtggaggaaat 24145008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 104 - 444
Target Start/End: Complemental strand, 24126045 - 24125705
Alignment:
Q  104 tcttttataagctgctttgataatttatataagagtgtgactgaattgagttcagacaagtgtttgaggtcacaacttatgaaagacagactatccattc 203  Q
    |||||| |||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| | ||||||| |||| ||| ||    
T  24126045 tcttttgtaagctgcattgataatttatacaagagcgtgactgaattgagttcagacaagtgtttgaggtcacagcttttcaaagacatactaaccagtc 24125946  T
Q  204 caatgatttccatacaatctgaactcaggaaccagatactaccgatacctaaaaacaattataaggaaaaaagtatgtcatatcaatttgttgatcctaa 303  Q
    |||  ||||||   ||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||| |||||||||  ||||| ||||||||||    
T  24125945 caaccatttccgctcaatctgaactcagacaccagatattaccgatacctaaaaacaattataaggaaaaaaatatgtcatacaaatttattgatcctaa 24125846  T
Q  304 atcccctatttctggaggatatgctagagcaccattaacgtttatggtgacagacgaattggttgtgactccaatgtcatccattgatggtatttcatat 403  Q
    ||||||||||||||| ||||||||| ||||| |||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||    
T  24125845 atcccctatttctggtggatatgctggagcatcattaacgtttatggtgacagatgacttgattgtgactccaatgtcatccattgatggtatttcatat 24125746  T
Q  404 cttgaaagaatgaaggtctcacttaatgacgtggaggaaat 444  Q
    |||||||||||||||||  | |||| |||||||||||||||    
T  24125745 cttgaaagaatgaaggttccccttagtgacgtggaggaaat 24125705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 5 - 274
Target Start/End: Complemental strand, 24126380 - 24126111
Alignment:
Q  5 cagattttgtttgttgaagcagatgatgattttgctgatttagtttttagttttctcacttttcccttgggatcggtgttgcatattctccaaggattct 104  Q
    ||||| |||||| |||||||||| || |||||||||||||| ||||||||||||||||| ||||||||||||   ||||| | ||| | | |||||||||    
T  24126380 cagatcttgtttattgaagcagaggaagattttgctgattttgtttttagttttctcacatttcccttgggaggagtgttacttatgcacgaaggattct 24126281  T
Q  105 cttttataagctgctttgataatttatataagagtgtgactgaattgagttcagacaagtgtttgaggtcacaacttatgaaagacagactatccattcc 204  Q
    |||   |||||||| |||||||||||||||||||||||||||||||||| ||||| || || || ||||||||   | | ||| ||  |||| | | |||    
T  24126280 cttccttaagctgcattgataatttatataagagtgtgactgaattgagctcagaaaaatggttaaggtcacagtatttcaaaaacctactaactaatcc 24126181  T
Q  205 aatgatttccatacaatctgaactcaggaaccagatactaccgatacctaaaaacaattataaggaaaaa 274  Q
    ||  |||||||| || |||||||||| |||||||||| ||||||||||| | ||||||||||||||||||    
T  24126180 aagcatttccatgcagtctgaactcacgaaccagatattaccgataccttataacaattataaggaaaaa 24126111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 291 - 445
Target Start/End: Complemental strand, 24121051 - 24120897
Alignment:
Q  291 ttgttgatcctaaatcccctatttctggaggatatgctagagcaccattaacgtttatggtgacagacgaattggttgtgactccaatgtcatccattga 390  Q
    ||||||||||||||||| || ||||||||||||||   | || |||||||||  |||||||||||||||| |||||||||||||||||||||||||||||    
T  24121051 ttgttgatcctaaatcctctctttctggaggatatatcaaaggaccattaacaattatggtgacagacgacttggttgtgactccaatgtcatccattga 24120952  T
Q  391 tggtatttcatatcttgaaagaatgaaggtctcacttaatgacgtggaggaaatt 445  Q
     | | |||||||||| ||||||||||||||| | |||||||||||||||||||||    
T  24120951 cgctgtttcatatctagaaagaatgaaggtccctcttaatgacgtggaggaaatt 24120897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 345 - 446
Target Start/End: Complemental strand, 24131463 - 24131362
Alignment:
Q  345 ttatggtgacagacgaattggttgtgactccaatgtcatccattgatggtatttcatatcttgaaagaatgaaggtctcacttaatgacgtggaggaaat 444  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| | |||| ||||| ||||||||||||||| | ||||||||||||||||||||    
T  24131463 ttatggtgacagacgacttggttgtgactccaatgtcatccattgatgctgtttcgtatctagaaagaatgaaggtccctcttaatgacgtggaggaaat 24131364  T
Q  445 tg 446  Q
    ||    
T  24131363 tg 24131362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 288 - 446
Target Start/End: Complemental strand, 24158577 - 24158419
Alignment:
Q  288 aatttgttgatcctaaatcccctatttctggaggatatgctagagcaccattaacgtttatggtgacagacgaattggttgtgactccaatgtcatccat 387  Q
    ||||||||||||| |||| |||| ||||||||||||||| ||||| ||| |||||   ||||||||||||||| ||||||| ||||||||| ||||| ||    
T  24158577 aatttgttgatcccaaattccctgtttctggaggatatgttagaggaccgttaacaactatggtgacagacgacttggttgcgactccaatttcatctat 24158478  T
Q  388 tgatggtatttcatatcttgaaagaatgaaggtctcacttaatgacgtggaggaaattg 446  Q
     |||||| |||||||||| ||||||||||| ||||| |||  |||  ||||||||||||    
T  24158477 cgatggtgtttcatatctagaaagaatgaatgtctcccttgttgatttggaggaaattg 24158419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 288 - 443
Target Start/End: Complemental strand, 24150146 - 24149991
Alignment:
Q  288 aatttgttgatcctaaatcccctatttctggaggatatgctagagcaccattaacgtttatggtgacagacgaattggttgtgactccaatgtcatccat 387  Q
    |||||||||||||||| |||||||| || |||||||   |||||| ||||||||| || |||||||| ||||| |||||||||||||||||||| || ||    
T  24150146 aatttgttgatcctaagtcccctatatcaggaggattctctagaggaccattaacattcatggtgaccgacgacttggttgtgactccaatgtcgtcaat 24150047  T
Q  388 tgatggtatttcatatcttgaaagaatgaaggtctcacttaatgacgtggaggaaa 443  Q
       |||| |||||||| | ||||||||||||||| | |||||||| ||||| ||||    
T  24150046 atctggtgtttcatatttagaaagaatgaaggtcccccttaatgatgtggaagaaa 24149991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 295 - 420
Target Start/End: Complemental strand, 24153310 - 24153185
Alignment:
Q  295 tgatcctaaatcccctatttctggaggatatgctagagcaccattaacgtttatggtgacagacgaattggttgtgactccaatgtcatccattgatggt 394  Q
    |||||| ||| || || |||||||||||||||  |||| ||| |||||| || ||||||||||||| ||||||||||||||||| ||||| ||||||| |    
T  24153310 tgatccaaaacccactctttctggaggatatgtcagaggacctttaacgattttggtgacagacgacttggttgtgactccaatttcatctattgatgct 24153211  T
Q  395 atttcatatcttgaaagaatgaaggt 420  Q
     |||||||||| |||| | |||||||    
T  24153210 gtttcatatctagaaaaattgaaggt 24153185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 6 - 159
Target Start/End: Original strand, 24284887 - 24285040
Alignment:
Q  6 agattttgtttgttgaagcagatgatgattttgctgatttagtttttagttttctcacttttcccttgggatcggtgttgcatattctccaaggattctc 105  Q
    |||||||||||||||||| ||  |  ||||||  ||| ||  ||||||||||||| || || ||||||||    ||||||||||| || |||||||||||    
T  24284887 agattttgtttgttgaaggaggggtagattttattgactttatttttagttttctaaccttccccttggggggagtgttgcatatgcttcaaggattctc 24284986  T
Q  106 ttttataagctgctttgataatttatataagagtgtgactgaattgagttcaga 159  Q
    || | |||||||| |||||||||||||||| || || |||||||||||| ||||    
T  24284987 ttctttaagctgcattgataatttatataaaagcgtaactgaattgagtccaga 24285040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 152
Target Start/End: Complemental strand, 24121343 - 24121199
Alignment:
Q  8 attttgtttgttgaagcagatgatgattttgctgatttagtttttagttttctcacttttcccttgggatcggtgttgcatattctccaaggattctctt 107  Q
    |||||||||| |  ||||||||| |||||||| |||||  ||||||||||||| || |||||| |||||   |||||||| || ||  ||||||||||||    
T  24121343 attttgtttgctacagcagatgaagattttgcagattttctttttagttttctaacatttcccatgggaggagtgttgcaaatgctagaaggattctctt 24121244  T
Q  108 ttataagctgctttgataatttatataagagtgtgactgaattga 152  Q
     | |||||||| |||||| ||||||||| ||  ||||||| ||||    
T  24121243 ctttaagctgcattgatattttatataaaagcatgactgagttga 24121199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 177
Target Start/End: Original strand, 24238929 - 24239097
Alignment:
Q  9 ttttgtttgttgaagcagatgatgattttgctgatttagtttttagttttctcacttttcccttgggatcggtgttgcatattctccaaggattctcttt 108  Q
    |||||| || |||||| || || |||||||| || ||  |||| |||||||||||||| ||||| |||   ||||||||||| || |||||||| ||||     
T  24238929 ttttgtatgctgaagctgaggaagattttgcggactttcttttgagttttctcactttccccttaggaggagtgttgcatatgcttcaaggattttcttc 24239028  T
Q  109 tataagctgctttgataatttatataagagtgtgactgaattgagttcagacaagtgtttgaggtcaca 177  Q
    |||||||||| ||||||||||||| |  ||  ||||||  ||||||||||| | || ||||| ||||||    
T  24239029 tataagctgcattgataatttatacaccagcatgactgctttgagttcagataggtatttgatgtcaca 24239097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 24231854 - 24231753
Alignment:
Q  1 tgaacagattttgtttgttgaagcagatgatgattttgctgatttagtttttagttttctcacttttcccttgggatcggtgttgcatattctccaagga 100  Q
    |||||| ||| |||||||||||||||  |||||||||  ||| || |||||||||||||| || |||||||| |||   ||||||||||| || ||||||    
T  24231854 tgaacaaattctgtttgttgaagcaggagatgattttattgactttgtttttagttttctaacatttcccttaggaggagtgttgcatatgcttcaagga 24231755  T
Q  101 tt 102  Q
    ||    
T  24231754 tt 24231753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 289 - 432
Target Start/End: Complemental strand, 24160211 - 24160068
Alignment:
Q  289 atttgttgatcctaaatcccctatttctggaggatatgctagagcaccattaacgtttatggtgacagacgaattggttgtgactccaatgtcatccatt 388  Q
    |||||||||||| |||||||||||||||||||||| |   ||||  |||    |||| |||||||| ||||| || ||||||| |||||||||||  |||    
T  24160211 atttgttgatcccaaatcccctatttctggaggatttctcagagggccaacttcgttcatggtgactgacgacttagttgtgagtccaatgtcattgatt 24160112  T
Q  389 gatggtatttcatatcttgaaagaatgaaggtctcacttaatga 432  Q
      |||| || | ||| | ||||||||||||||| | ||||||||    
T  24160111 tctggtcttgcgtatttagaaagaatgaaggtcccccttaatga 24160068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 3494185 - 3494048
Alignment:
Q  1 tgaacagattttgtttgttgaagcagatgatgattttgctgatttagtttttagttttctcacttttcccttgggatcggtgttgcatattctccaagga 100  Q
    |||||| ||| ||||||||||||| |  |||||||||| ||| || |||| ||||||||| || || ||||| |||  ||| || || || || ||||||    
T  3494185 tgaacaaattctgtttgttgaagccggggatgattttgttgactttgtttatagttttctaaccttccccttaggacgggttttacacatgcttcaagga 3494086  T
Q  101 ttctcttttataagctgctttgataatttatataagag 138  Q
    ||||| | | |||||||| ||||||| ||||| |||||    
T  3494085 ttctcctctttaagctgcattgataacttatacaagag 3494048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 24150427 - 24150294
Alignment:
Q  1 tgaacagattttgtttgttgaagcagatgatgattttgctgatttagtttttagttttctcacttttcccttgggatcggtgttgcatattctccaagga 100  Q
    |||||| |||||||||||||||||| | || ||||||||||| || || ||||||||||| || ||||| || |||   ||  | |||||  |   ||||    
T  24150427 tgaacaaattttgtttgttgaagcacaagaagattttgctgactttgtatttagttttctaacatttccattaggaagtgttatacatatgtttggagga 24150328  T
Q  101 ttctcttttataagctgctttgataatttatata 134  Q
    ||||||||| |||| ||| |||||||||||||||    
T  24150327 ttctcttttctaaggtgcattgataatttatata 24150294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 381
Target Start/End: Original strand, 24239353 - 24239421
Alignment:
Q  313 ttctggaggatatgctagagcaccattaacgtttatggtgacagacgaattggttgtgactccaatgtc 381  Q
    |||||||| |||||||||||  |||| || ||| |||||||||||||| ||||  ||||||||||||||    
T  24239353 ttctggagaatatgctagagggccatcaatgttcatggtgacagacgacttggcagtgactccaatgtc 24239421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 153
Target Start/End: Original strand, 21200367 - 21200514
Alignment:
Q  6 agattttgtttgttgaagcagatgatgattttgctgatttagtttttagttttctcacttttcccttgggatcggtgttgcatattctccaaggattctc 105  Q
    |||||||||||| |||||||   |||||||||  | | ||  |||| |||||||| ||||| || ||||||   ||||||||||| || ||||| |||||    
T  21200367 agattttgtttgctgaagcaagagatgattttattaactttattttcagttttctaactttccctttgggaggagtgttgcatatgcttcaaggtttctc 21200466  T
Q  106 ttttataagctgctttgataatttatataagagtgtgactgaattgag 153  Q
    || | ||| |||| ||||||||||||| || || ||||| || |||||    
T  21200467 ttctttaaactgcattgataatttatacaaaagcgtgaccgagttgag 21200514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 178
Target Start/End: Complemental strand, 24160399 - 24160343
Alignment:
Q  122 gataatttatataagagtgtgactgaattgagttcagacaagtgtttgaggtcacaa 178  Q
    |||||||||||||| ||| ||||||| |||| | |||||| |||||| |||||||||    
T  24160399 gataatttatataacagtatgactgagttgaatccagacaggtgtttaaggtcacaa 24160343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 283 - 443
Target Start/End: Original strand, 15381320 - 15381480
Alignment:
Q  283 atatcaatttgttgatcctaaatcccctatttctggaggatatgctagagcaccattaacgtttatggtgacagacgaattggttgtgactccaatgtca 382  Q
    |||| ||||| |||||||||||||||||||||||||||||||||  | || |||  | || || || |||||||||||  |||| ||||| ||  | |||    
T  15381320 atataaatttattgatcctaaatcccctatttctggaggatatgtcaaaggaccgattaccttcatcgtgacagacgacatggtagtgaccccgttatca 15381419  T
Q  383 tccattgatggtatttcatatcttgaaagaatgaaggtctcacttaatgacgtggaggaaa 443  Q
    ||||||| || | |||| ||||| ||||||||||||||  |  ||||||| ||||||||||    
T  15381420 tccattgctgttgtttcctatctagaaagaatgaaggttgcctttaatgatgtggaggaaa 15381480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 15381087 - 15381172
Alignment:
Q  47 gtttttagttttctcacttttcccttgggatcggtgttgcatattctccaaggattctcttttataagctgctttgataatttata 132  Q
    |||||||||||||| || || ||||| |||   ||||||||||| || ||||||||||||||  |||||||| |||||||||||||    
T  15381087 gtttttagttttctaaccttccccttaggaggagtgttgcatatgcttcaaggattctctttgttaagctgcattgataatttata 15381172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University