View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20887_low_4 (Length: 454)
Name: NF20887_low_4
Description: NF20887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20887_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 21 - 443
Target Start/End: Complemental strand, 863932 - 863505
Alignment:
| Q |
21 |
tgcacaagacgaacatagtgaattaatcaaaccttggtgttcttgcaatgctctaaatcactccaatatgattcatcaacgacaacatctctactagtat |
120 |
Q |
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| T |
863932 |
tgcacaagacgaacagagtgaattaatcaaaccttggtgttcttgcaatgctctaaatcactccaatatgattcatcaacgacaacatctctactagtat |
863833 |
T |
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| Q |
121 |
ttgtgtccatatagaccgttccaatcgatgaagtgaacacaacacgtcgcacttttgcttccgcagacgctataatcacattctttgttccattcactgc |
220 |
Q |
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| T |
863832 |
ttgggtccatatagaccgttccaatcgatgaagtgaaaacaacacgtcgcactttagcttccgcggacgctataatcacattcttagttccattcactgc |
863733 |
T |
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| Q |
221 |
tggctccaacatctcatcctattatatgttccataaaatgattaatttaccttataa--gttgctctttataaatg---ttatattttcgaatggaaaac |
315 |
Q |
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| T |
863732 |
tggctctaacatctcatcctattatatgttccataaaatgattaattcaccttataactgttacattttctatgtgaaattaaatttacaaatggaaaac |
863633 |
T |
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| Q |
316 |
aatgaaaataactcacagggttgtcggtgacgggggaggctgtgtggaacacaccatggcaaccatggacaacagattggatagattgaagatcaagaag |
415 |
Q |
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| T |
863632 |
aaagaaaattccttacagggttgtcagtgacaggagaggctgtgtggaacacaccatggcaaccatgaacaacagattggatagattgaagatcaagaag |
863533 |
T |
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| Q |
416 |
atcaaccttatgcaaagttagcctctct |
443 |
Q |
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| T |
863532 |
atcaaccttatgcaaagttaacctctct |
863505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 44 - 135
Target Start/End: Complemental strand, 854182 - 854092
Alignment:
| Q |
44 |
taatcaaaccttggtgttcttgcaatgctctaaatcactccaatatgattcatcaacgacaacatctctactagtatttgtgtccatataga |
135 |
Q |
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| T |
854182 |
taatcaaaccttggtgttcttgcaatattctaaatcactccaatatgaatcat-aaccacaacaaccctacttgtatttgggtccaaataga |
854092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 394
Target Start/End: Complemental strand, 854049 - 853981
Alignment:
| Q |
326 |
actcacagggttgtcggtgacgggggaggctgtgtggaacacaccatggcaaccatggacaacagattg |
394 |
Q |
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| T |
854049 |
actcacagggttgtcggtgacaggataggctgtgtggagtacaccatgacaagcatgaactacagattg |
853981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 51 - 228
Target Start/End: Complemental strand, 45243091 - 45242914
Alignment:
| Q |
51 |
accttggtgttcttgcaatgctctaaatcactccaatatgattcatcaacgacaacatctctactagtatttgtgtccatatagaccgttccaatcgatg |
150 |
Q |
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| T |
45243091 |
accttggttttcttgcaaaactccaaatcactccagcaagactcatcaacctctacatcaacactcctattggggtccatatagactgcaccaattgatg |
45242992 |
T |
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| Q |
151 |
aagtgaacacaacacgtcgcacttttgcttccgcagacgctataatcacattctttgttccattcactgctggctcca |
228 |
Q |
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| T |
45242991 |
atgtgaaaaccacgcgcctcacttttgcttctgcaccagctatgatcacattctttgctccattcactgctggctcca |
45242914 |
T |
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