View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20887_low_5 (Length: 439)
Name: NF20887_low_5
Description: NF20887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20887_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 23 - 435
Target Start/End: Original strand, 41490766 - 41491178
Alignment:
| Q |
23 |
aaaacagttttgaatttaaatattcttctcatgttccacaggtcagctggcaaagagttgttgtctctaatcgccctgtctttgaatcttgatgaaaatt |
122 |
Q |
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| T |
41490766 |
aaaacagttttgaatttaaatattcttctcatgttccacaggtcagctggcaaagagttgttgtctttaatcgccctgtctttgaatcttgatgaaaatt |
41490865 |
T |
|
| Q |
123 |
attttgagaagatcagtgccttaaatttaccagaagcttttcttcgccttttgcgctatccaggtttattagtatttattttattttctgaaccttctta |
222 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41490866 |
attttgagaagatcagtgccttaaataaaccagaagcttttcttcgccttttgcgctatccaggtttattagtatttattttattttctgaaccttctta |
41490965 |
T |
|
| Q |
223 |
attaagcacatagcctaatcggtaataccaattttgtttgccttttactgttgataacgtgtttgtaaattacattaggtgaattgggacctaatgaaga |
322 |
Q |
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| T |
41490966 |
attaagcacatagcctaatcggtaataccaattttgtttgccttttactgttgataacgtgtttgtaaattacattaggtgaattgggacctaatgaaga |
41491065 |
T |
|
| Q |
323 |
gatatgtggtgcctctgctcattcagattatggcatgatcactctcctattatccaacggtgttccaggactgcaggttctcatattgaaccttaactcc |
422 |
Q |
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| T |
41491066 |
gatatgtggtgcctctgctcattcagattatggcatgatcactctcctattaaccaacggtgttccaggactgcaggttctcatattgaaccttaactcc |
41491165 |
T |
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| Q |
423 |
tgtttaaagttag |
435 |
Q |
| |
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| T |
41491166 |
tgtttaaagttag |
41491178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 35 - 189
Target Start/End: Original strand, 41482963 - 41483120
Alignment:
| Q |
35 |
aatttaaatattcttctcatgttccaca---ggtcagctggcaaagagttgttgtctctaatcgccctgtctttgaatcttgatgaaaattattttgaga |
131 |
Q |
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||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||| ||| ||| |
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| T |
41482963 |
aatttcaatattcttcttatgttccacaacaggtcagctggcaaagagttgttgtctctaattgccttgtctttgaatcttgatgaagattactttcaga |
41483062 |
T |
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| Q |
132 |
agatcagtgccttaaatttaccagaagcttttcttcgccttttgcgctatccaggttt |
189 |
Q |
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| T |
41483063 |
agatcagtgcctcaaacaaaccggatgcttttcttcgccttttgcgctatccaggttt |
41483120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 290 - 406
Target Start/End: Original strand, 41497266 - 41497382
Alignment:
| Q |
290 |
aattacattaggtgaattgggacctaatgaagagatatgtggtgcctctgctcattcagattatggcatgatcactctcctattatccaacggtgttcca |
389 |
Q |
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||||| || ||||||||||||| || |||||||| || |||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41497266 |
aattatatcaggtgaattgggatctcgtgaagagaaatatggtgcctctcctcatacagattatggcatgatcactctcctattgaccaacggtgttcca |
41497365 |
T |
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| Q |
390 |
ggactgcaggttctcat |
406 |
Q |
| |
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||||||||||||||||| |
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| T |
41497366 |
ggactgcaggttctcat |
41497382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 61 - 193
Target Start/End: Original strand, 41496947 - 41497080
Alignment:
| Q |
61 |
caggtcagctggcaaagagttgttgtctctaatcgccctgtctttgaatctt-gatgaaaattattttgagaagatcagtgccttaaatttaccagaagc |
159 |
Q |
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|||||||||||||||||||||| | |||||||| ||| ||||||||| ||| ||||||||| | ||||||||||| ||||||||| ||||| ||| |
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| T |
41496947 |
caggtcagctggcaaagagttgctttctctaattgccttgtctttgagtctaagatgaaaatcactttgagaagataggtgccttaagcataccaaaagt |
41497046 |
T |
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| Q |
160 |
ttttcttcgccttttgcgctatccaggtttatta |
193 |
Q |
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||||||||||||||||| |||||||||||||||| |
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| T |
41497047 |
ttttcttcgccttttgcactatccaggtttatta |
41497080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 327 - 402
Target Start/End: Original strand, 41483224 - 41483299
Alignment:
| Q |
327 |
tgtggtgcctctgctcattcagattatggcatgatcactctcctattatccaacggtgttccaggactgcaggttc |
402 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||| ||||||| |
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| T |
41483224 |
tgtggtgcctctgctcattcagattatggcatgatcactctcctaatcaccaatggtgttccaggactacaggttc |
41483299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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