View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20887_low_6 (Length: 375)

Name: NF20887_low_6
Description: NF20887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20887_low_6
NF20887_low_6
[»] chr7 (9 HSPs)
chr7 (4-355)||(17718381-17718732)
chr7 (64-355)||(17699448-17699739)
chr7 (54-355)||(17708557-17708858)
chr7 (64-355)||(16722434-16722725)
chr7 (54-289)||(17736860-17737095)
chr7 (54-355)||(17736211-17736512)
chr7 (54-190)||(16730588-16730724)
chr7 (17-49)||(16730744-16730776)
chr7 (17-49)||(17708878-17708910)
[»] chr3 (22 HSPs)
chr3 (264-355)||(46539281-46539372)
chr3 (99-199)||(46480224-46480324)
chr3 (259-355)||(46498232-46498328)
chr3 (106-193)||(5160714-5160801)
chr3 (129-199)||(51944321-51944391)
chr3 (109-198)||(46498380-46498469)
chr3 (259-313)||(46480116-46480170)
chr3 (106-199)||(5156676-5156769)
chr3 (276-325)||(46236553-46236602)
chr3 (99-199)||(46491137-46491237)
chr3 (156-199)||(46539443-46539486)
chr3 (156-199)||(46544915-46544958)
chr3 (274-313)||(46548763-46548802)
chr3 (275-314)||(51944218-51944257)
chr3 (259-313)||(4581133-4581187)
chr3 (259-313)||(4613590-4613644)
chr3 (275-313)||(5160603-5160641)
chr3 (282-328)||(47397076-47397122)
chr3 (276-313)||(5156574-5156611)
chr3 (104-205)||(46532338-46532439)
chr3 (254-355)||(46544756-46544857)
chr3 (156-196)||(16025912-16025952)
[»] chr8 (3 HSPs)
chr8 (276-355)||(9692480-9692559)
chr8 (108-198)||(21463784-21463874)
chr8 (273-328)||(21463949-21464004)
[»] chr5 (1 HSPs)
chr5 (134-202)||(30802073-30802141)
[»] chr4 (1 HSPs)
chr4 (282-314)||(35162763-35162795)


Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 4 - 355
Target Start/End: Complemental strand, 17718732 - 17718381
Alignment:
Q  4 atgtcgaagaaaatatatttcagatagtataagaataagaaataggacgtaatgggttgcttagaaaacatatttaagatactatggaattcaagaatca 103  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  17718732 atgtcaaacaaaatatatttcagatagtataagaataagaaataggacgtaatgggttgcttagaaaacatatttaagatgctatggaattcaagaatca 17718633  T
Q  104 accatcaagaggattgaccaccttcccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagctacaaagtcgatt 203  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17718632 accatcaagaggattgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagctacaaagtcgatt 17718533  T
Q  204 ggagggggaggagggggactatacgcagcacacttgcatgccatgctaacggtcaccgctgcagcttttgtaccttcttcatttacttcaatgaaagact 303  Q
    |||||||| |||||||||||||||  || ||||  ||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  17718532 ggagggggcggagggggactataccgagaacacccgcataacatgctaacggtcaccgctgcagcttttgtaccttcttcgtttacttcaatgcaagact 17718433  T
Q  304 tctgaaatatgccggaaacataaagttcttgacttataggagagtccaccat 355  Q
    |||||| |||| |||||||| | | |||||||||||||||||||||||||||    
T  17718432 tctgaagtatgtcggaaacaaatatttcttgacttataggagagtccaccat 17718381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 64 - 355
Target Start/End: Complemental strand, 17699739 - 17699448
Alignment:
Q  64 ttagaaaacatatttaagatactatggaattcaagaatcaaccatcaagaggattgaccaccttcccaacaaagagtatggttccactaaactcttctct 163  Q
    ||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  17699739 ttagaaaacatatttgagatactatggaattcaacaattaaccatcaagaggattgaccacctttccaacaaagagtatggttccactaaactcttctct 17699640  T
Q  164 gatcagaaataaaaaagggtggtcagctacaaagtcgattggagggggaggagggggactatacgcagcacacttgcatgccatgctaacggtcaccgct 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  || || |  | ||   | ||||||||||||||||    
T  17699639 gatcagaaataaaaaagggtggtcagctacaaagtcgattggagggggcggagggggactataccgagaacgcgaggatatgaagctaacggtcaccgct 17699540  T
Q  264 gcagcttttgtaccttcttcatttacttcaatgaaagacttctgaaatatgccggaaacataaagttcttgacttataggagagtccaccat 355  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17699539 gcagctttcgtaccttcttcatttacttcaatgaaagacttctgaaatatgccggaaacataaagttcttgacttataggagagtccaccat 17699448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 54 - 355
Target Start/End: Complemental strand, 17708858 - 17708557
Alignment:
Q  54 aatgggttgcttagaaaacatatttaagatactatggaattcaagaatcaaccatcaagaggattgaccaccttcccaacaaagagtatggttccactaa 153  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  17708858 aatgggttgcttagaaaacatatttaagatactatggaattcaacaatcaaccatcaagaggattgaccacctttccaacaaagagtatggttccactaa 17708759  T
Q  154 actcttctctgatcagaaataaaaaagggtggtcagctacaaagtcgattggagggggaggagggggactatacgcagcacacttgcatgccatgctaac 253  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| | |||||||| ||||||| || |||   | || | |||| | |    
T  17708758 actcttctctgatcagaaataaaaaagggtggtcagcaacaaagtccattggagggagcggagggggtctatacggagaacatccgtatactatgccagc 17708659  T
Q  254 ggtcaccgctgcagcttttgtaccttcttcatttacttcaatgaaagacttctgaaatatgccggaaacataaagttcttgacttataggagagtccacc 353  Q
    |||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17708658 ggtcgctgctgcagctttcgtaccttcttcatttacttcaatgaaagacttctgaaatatgccggaaacataaagttcttgacttataggagagtccacc 17708559  T
Q  354 at 355  Q
    ||    
T  17708558 at 17708557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 64 - 355
Target Start/End: Complemental strand, 16722725 - 16722434
Alignment:
Q  64 ttagaaaacatatttaagatactatggaattcaagaatcaaccatcaagaggattgaccaccttcccaacaaagagtatggttccactaaactcttctct 163  Q
    ||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  16722725 ttagaaaacatatttgagatactatggaattcaacaattaaccatcaagaggattgaccacctttccaacaaagagtatggttccactaaactcttctct 16722626  T
Q  164 gatcagaaataaaaaagggtggtcagctacaaagtcgattggagggggaggagggggactatacgcagcacacttgcatgccatgctaacggtcaccgct 263  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||| | |||||||| ||||||| || |||   | || | |||| | ||||| | |||    
T  16722625 gatcagaaataaaaaagggtggtcagcaacaaagtccattggagggagcggagggggtctatacggagaacatccgtatactatgccagcggtcgctgct 16722526  T
Q  264 gcagcttttgtaccttcttcatttacttcaatgaaagacttctgaaatatgccggaaacataaagttcttgacttataggagagtccaccat 355  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16722525 gcagctttcgtaccttcttcatttacttcaatgaaagacttctgaaatatgccggaaacataaagttcttgacttataggagagtccaccat 16722434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 54 - 289
Target Start/End: Complemental strand, 17737095 - 17736860
Alignment:
Q  54 aatgggttgcttagaaaacatatttaagatactatggaattcaagaatcaaccatcaagaggattgaccaccttcccaacaaagagtatggttccactaa 153  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  17737095 aatgggttgcttagaaaacatatttaagatactatggaattcaaaaatcaaccatcaagaggattgaccacctttccaacaaagagtatggttccactaa 17736996  T
Q  154 actcttctctgatcagaaataaaaaagggtggtcagctacaaagtcgattggagggggaggagggggactatacgcagcacacttgcatgccatgctaac 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  || ||||  ||||  || ||||||    
T  17736995 actcttctctgatcagaaataaaaaagggtggtcagctacaaagtcgattggagggggcggagggggactataccgagaacacccgcataacacgctaac 17736896  T
Q  254 ggtcaccgctgcagcttttgtaccttcttcatttac 289  Q
    |||||||||||||||||||||||||||||| |||||    
T  17736895 ggtcaccgctgcagcttttgtaccttcttcgtttac 17736860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 54 - 355
Target Start/End: Complemental strand, 17736512 - 17736211
Alignment:
Q  54 aatgggttgcttagaaaacatatttaagatactatggaattcaagaatcaaccatcaagaggattgaccaccttcccaacaaagagtatggttccactaa 153  Q
    ||||||||  ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  17736512 aatgggttatttagaaaacatatttgagatactatggaattcaacaatcaaccatcaagaggattgaccacctttccaacaaagagtatggttccactaa 17736413  T
Q  154 actcttctctgatcagaaataaaaaagggtggtcagctacaaagtcgattggagggggaggagggggactatacgcagcacacttgcatgccatgctaac 253  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||| | | | ||||     || ||   ||| |      
T  17736412 actcttctctgatcagaaataaaaaagggtggtcagcaacaaagtcgattggagggggcggagggagacgaaatggagcagcgccgcctgtactgccacg 17736313  T
Q  254 ggtcaccgctgcagcttttgtaccttcttcatttacttcaatgaaagacttctgaaatatgccggaaacataaagttcttgacttataggagagtccacc 353  Q
    ||    |||||||||| | |||||||||||||||| |||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||    
T  17736312 ggctgtcgctgcagctatcgtaccttcttcatttaattcaatgaaagacttctgaaatatgctggtaacagaaagttcttgacttataggagagtccacc 17736213  T
Q  354 at 355  Q
    ||    
T  17736212 at 17736211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 54 - 190
Target Start/End: Complemental strand, 16730724 - 16730588
Alignment:
Q  54 aatgggttgcttagaaaacatatttaagatactatggaattcaagaatcaaccatcaagaggattgaccaccttcccaacaaagagtatggttccactaa 153  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  16730724 aatgggttgcttagaaaacatatttaagatactatggaattcaacaatcaaccatcaagaggattgaccacctttccaacaaagagtatggttccactaa 16730625  T
Q  154 actcttctctgatcagaaataaaaaagggtggtcagc 190  Q
    |||||||||||||||||||||||||||||||||||||    
T  16730624 actcttctctgatcagaaataaaaaagggtggtcagc 16730588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 16730776 - 16730744
Alignment:
Q  17 tatatttcagatagtataagaataagaaatagg 49  Q
    |||||||||||||||||||||||||||||||||    
T  16730776 tatatttcagatagtataagaataagaaatagg 16730744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 17708910 - 17708878
Alignment:
Q  17 tatatttcagatagtataagaataagaaatagg 49  Q
    |||||||||||||||||||||||||||||||||    
T  17708910 tatatttcagatagtataagaataagaaatagg 17708878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 264 - 355
Target Start/End: Complemental strand, 46539372 - 46539281
Alignment:
Q  264 gcagcttttgtaccttcttcatttacttcaatgaaagacttctgaaatatgccggaaacataaagttcttgacttataggagagtccaccat 355  Q
    |||||||| || |||| ||||||||||||||| |||||||| || ||||   ||||||||||||| | ||||||| ||||||||||||||||    
T  46539372 gcagctttggttccttgttcatttacttcaataaaagacttgtggaatacatcggaaacataaaggttttgacttgtaggagagtccaccat 46539281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 99 - 199
Target Start/End: Complemental strand, 46480324 - 46480224
Alignment:
Q  99 aatcaaccatcaagaggattgaccaccttcccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagctacaaagt 198  Q
    ||||| ||| |||||||||||| |||||  ||||||||||  || |||||  | || |||||||| |||| |||||| ||||||||||||||||||||||    
T  46480324 aatcacccagcaagaggattgagcacctgtccaacaaagatgattgttccggtcaagtcttctctaatcataaataagaaagggtggtcagctacaaagt 46480225  T
Q  199 c 199  Q
    |    
T  46480224 c 46480224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 259 - 355
Target Start/End: Complemental strand, 46498328 - 46498232
Alignment:
Q  259 ccgctgcagcttttgtaccttcttcatttacttcaatgaaagacttctgaaatatgccggaaacataaagttcttgacttataggagagtccaccat 355  Q
    |||| |||||||| || ||||||||||||||||||||||||||||| || |||||   |||||||||||| | |||||| | || ||||| ||||||    
T  46498328 ccgcagcagctttggtgccttcttcatttacttcaatgaaagacttgtggaatattttggaaacataaaggttttgactcacagcagagttcaccat 46498232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 193
Target Start/End: Complemental strand, 5160801 - 5160714
Alignment:
Q  106 catcaagaggattgaccaccttcccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagctac 193  Q
    |||||||||||||||  || |  ||||||||||| ||||||||| |  | |||||||| ||||||||||| |||||||||||||||||    
T  5160801 catcaagaggattgagtacttgtccaacaaagagaatggttccagtccaatcttctctaatcagaaataagaaagggtggtcagctac 5160714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 51944391 - 51944321
Alignment:
Q  129 ccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagctacaaagtc 199  Q
    ||||||||||  || |||||| | || |||||||| ||||||||||| |||||||||||||||||||||||    
T  51944391 ccaacaaagatgattgttccagtcaaatcttctctaatcagaaataagaaagggtggtcagctacaaagtc 51944321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 198
Target Start/End: Complemental strand, 46498469 - 46498380
Alignment:
Q  109 caagaggattgaccaccttcccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagctacaaagt 198  Q
    |||||||||||| ||||| |||||||||||  || |||||  | || ||||||||||| | |||||| || |||||||||||||||||||    
T  46498469 caagaggattgagcacctgcccaacaaagacgatagttccggtcaaatcttctctgataataaataagaatgggtggtcagctacaaagt 46498380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 313
Target Start/End: Complemental strand, 46480170 - 46480116
Alignment:
Q  259 ccgctgcagcttttgtaccttcttcatttacttcaatgaaagacttctgaaatat 313  Q
    |||| |||||||  || ||||||||||||||||||||||||||||| ||||||||    
T  46480170 ccgcagcagcttcagtgccttcttcatttacttcaatgaaagacttgtgaaatat 46480116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 5156769 - 5156676
Alignment:
Q  106 catcaagaggattgaccaccttcccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagctacaaagtc 199  Q
    ||||||| ||||||| ||| |  ||||||||||| ||||||||| |  | | |||||| || |||||||| |||||||| ||||||||||||||    
T  5156769 catcaagtggattgagcacttgtccaacaaagagaatggttccagtcgagttttctctaattagaaataagaaagggtgatcagctacaaagtc 5156676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 325
Target Start/End: Original strand, 46236553 - 46236602
Alignment:
Q  276 ccttcttcatttacttcaatgaaagacttctgaaatatgccggaaacata 325  Q
    |||||||||||||||||||||||||| || |||||||||  |||||||||    
T  46236553 ccttcttcatttacttcaatgaaagatttgtgaaatatgttggaaacata 46236602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 199
Target Start/End: Complemental strand, 46491237 - 46491137
Alignment:
Q  99 aatcaaccatcaagaggattgaccaccttcccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagctacaaagt 198  Q
    ||||| ||| |||||||||||| |||||  ||||||||||  || |||||| | || |||||||| |||| ||| || ||||||||| |||| |||||||    
T  46491237 aatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggccagccacaaagt 46491138  T
Q  199 c 199  Q
    |    
T  46491137 c 46491137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 199
Target Start/End: Complemental strand, 46539486 - 46539443
Alignment:
Q  156 tcttctctgatcagaaataaaaaagggtggtcagctacaaagtc 199  Q
    ||||||||||||| ||| || |||||||||||||||||||||||    
T  46539486 tcttctctgatcaaaaacaagaaagggtggtcagctacaaagtc 46539443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 199
Target Start/End: Complemental strand, 46544958 - 46544915
Alignment:
Q  156 tcttctctgatcagaaataaaaaagggtggtcagctacaaagtc 199  Q
    ||||||||||||| ||| || |||||||||||||||||||||||    
T  46544958 tcttctctgatcaaaaacaagaaagggtggtcagctacaaagtc 46544915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 274 - 313
Target Start/End: Original strand, 46548763 - 46548802
Alignment:
Q  274 taccttcttcatttacttcaatgaaagacttctgaaatat 313  Q
    |||||||||| |||||||||||||||||||| ||||||||    
T  46548763 taccttcttcttttacttcaatgaaagacttgtgaaatat 46548802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 314
Target Start/End: Complemental strand, 51944257 - 51944218
Alignment:
Q  275 accttcttcatttacttcaatgaaagacttctgaaatatg 314  Q
    ||||||||||||||||||||||||||| || |||||||||    
T  51944257 accttcttcatttacttcaatgaaagatttgtgaaatatg 51944218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 313
Target Start/End: Original strand, 4581133 - 4581187
Alignment:
Q  259 ccgctgcagcttttgtaccttcttcatttacttcaatgaaagacttctgaaatat 313  Q
    |||| |||||||  |||||| |||||||||||||||| |||||||| ||||||||    
T  4581133 ccgcagcagcttcagtacctgcttcatttacttcaataaaagacttgtgaaatat 4581187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 313
Target Start/End: Original strand, 4613590 - 4613644
Alignment:
Q  259 ccgctgcagcttttgtaccttcttcatttacttcaatgaaagacttctgaaatat 313  Q
    |||| |||||||  |||||| |||||||||||||||| |||||||| ||||||||    
T  4613590 ccgcagcagcttcagtacctgcttcatttacttcaataaaagacttgtgaaatat 4613644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Complemental strand, 5160641 - 5160603
Alignment:
Q  275 accttcttcatttacttcaatgaaagacttctgaaatat 313  Q
    ||||||||||||||||||||||||||| || ||||||||    
T  5160641 accttcttcatttacttcaatgaaagatttgtgaaatat 5160603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 328
Target Start/End: Original strand, 47397076 - 47397122
Alignment:
Q  282 tcatttacttcaatgaaagacttctgaaatatgccggaaacataaag 328  Q
    |||||||||||||||||| ||||||||||||||  ||||||| ||||    
T  47397076 tcatttacttcaatgaaatacttctgaaatatgttggaaacaaaaag 47397122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 5156611 - 5156574
Alignment:
Q  276 ccttcttcatttacttcaatgaaagacttctgaaatat 313  Q
    |||||||||||||||||||||||||| || ||||||||    
T  5156611 ccttcttcatttacttcaatgaaagatttgtgaaatat 5156574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 205
Target Start/End: Complemental strand, 46532439 - 46532338
Alignment:
Q  104 accatcaagaggattgaccaccttcccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagctacaaagtcgatt 203  Q
    |||| |||||||||||| ||| |  |||||||||||||| || |||   || || ||||| |||| ||| |  ||||||||||||||||||||||| |||    
T  46532439 accaacaagaggattgagcacttggccaacaaagagtattgtaccagacaaatcgtctcttatcaaaaacatgaaagggtggtcagctacaaagtctatt 46532340  T
Q  204 gg 205  Q
    ||    
T  46532339 gg 46532338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 355
Target Start/End: Complemental strand, 46544857 - 46544756
Alignment:
Q  254 ggtcaccgctgcagcttttgtaccttcttcatttacttcaatgaaagacttctgaaatatgccggaaacataaagttcttgacttataggagagtccacc 353  Q
    ||||||||| |||||||  || || | ||||||||||||||| |||||||| || ||||||  ||||| || ||| | ||||   |||||||||||||||    
T  46544857 ggtcaccgcagcagcttcagttcccttttcatttacttcaataaaagacttgtggaatatgttggaaatatgaaggttttgatccataggagagtccacc 46544758  T
Q  354 at 355  Q
    ||    
T  46544757 at 46544756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 196
Target Start/End: Complemental strand, 16025952 - 16025912
Alignment:
Q  156 tcttctctgatcagaaataaaaaagggtggtcagctacaaa 196  Q
    |||||||| || |||||||| ||||||||||||||||||||    
T  16025952 tcttctctaattagaaataagaaagggtggtcagctacaaa 16025912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 355
Target Start/End: Original strand, 9692480 - 9692559
Alignment:
Q  276 ccttcttcatttacttcaatgaaagacttctgaaatatgccggaaacataaagttcttgacttataggagagtccaccat 355  Q
    ||||| || |||||||||||||||||||| |||||||||  ||||||| |||| ||||||| |  | |||||||||||||    
T  9692480 ccttcctcgtttacttcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccaccat 9692559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 198
Target Start/End: Original strand, 21463784 - 21463874
Alignment:
Q  108 tcaagaggattgaccaccttcccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagctacaaagt 198  Q
    ||||||||||||| ||| | ||||| |||||||||||||||    || ||||||||||||| ||| || |||||||| |||||||| ||||    
T  21463784 tcaagaggattgagcacttgcccaataaagagtatggttccggacaaatcttctctgatcaaaaacaagaaagggtgatcagctacgaagt 21463874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 328
Target Start/End: Original strand, 21463949 - 21464004
Alignment:
Q  273 gtaccttcttcatttacttcaatgaaagacttctgaaatatgccggaaacataaag 328  Q
    ||||||||||| ||||||||||| |||||||| |||||||||  ||| ||||||||    
T  21463949 gtaccttcttcgtttacttcaataaaagacttgtgaaatatgttggacacataaag 21464004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 30802141 - 30802073
Alignment:
Q  134 aaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagctacaaagtcgat 202  Q
    ||||||||| ||||||||||| ||| |||| || | |||||| |||||||| ||  |||||||||||||    
T  30802141 aaagagtatcgttccactaaattctgctcttataaaaaataataaagggtgatctactacaaagtcgat 30802073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 314
Target Start/End: Complemental strand, 35162795 - 35162763
Alignment:
Q  282 tcatttacttcaatgaaagacttctgaaatatg 314  Q
    ||||||||||||||||||||||| |||||||||    
T  35162795 tcatttacttcaatgaaagacttgtgaaatatg 35162763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University