View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20887_low_8 (Length: 334)
Name: NF20887_low_8
Description: NF20887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20887_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 6475416 - 6475107
Alignment:
| Q |
1 |
tttaccacgaatgagtattatctaaatttttaatcaccaccttgaggagagggtgtttgtgtaagactaatagattctaatgactcaaaataagctcaat |
100 |
Q |
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| T |
6475416 |
tttaccacgaatgagtatgatctaaatttgtaatcaccaccttgaggagagggtgtttctgtaagactaataaattctaatgactcaaaataagctcaat |
6475317 |
T |
|
| Q |
101 |
agattaaaataaactcaagttgattagatattttaagtgataaatcgtactttctagaatagggaatgttacgttgacactcatgcactagggacgttat |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
6475316 |
agattaaaataaacttaagttgattagatattttaagtgataaatcgtactttctagaatggggaatgttacgttgacactcatgcactagggacgtttt |
6475217 |
T |
|
| Q |
201 |
ggagaattcatcttacaatgacactttctcattcatttcctcttctctctttcacgatttctcctcttctacaacggtatgacgcctacctccaccctat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6475216 |
ggagaattcatcttacaatgacactttctcattcatttcctcttctctctttcacgatttctcctcttctacaacggtatgacgcctacctccaccctat |
6475117 |
T |
|
| Q |
301 |
cttcgtcggg |
310 |
Q |
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|||||||||| |
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| T |
6475116 |
cttcgtcggg |
6475107 |
T |
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