View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20888_high_10 (Length: 253)
Name: NF20888_high_10
Description: NF20888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20888_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 24156758 - 24156515
Alignment:
| Q |
1 |
catgcaaagaacaaattcaagtttctcaaattgccaataagaggaggaatctcaccagtgagagcattgttgtcaacttctagttgagtcaaagaagtgc |
100 |
Q |
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| T |
24156758 |
catgcaaagaacaaattcaagtttctcaaattgccaataagaggaggaatctcaccagtgagagcattgttgtcaatttcaagttgagtcaaagaagtgc |
24156659 |
T |
|
| Q |
101 |
aatgtgaaatctcaggaggtatgatacctgagagatgattgacactcaattgaagctcttgaagatttgaaagctcgccgagaatcttcggtatgctacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24156658 |
aatgtgaaatctcaggaggtatgatacctgagagatgattgacactcaattgaagctcttgaagatttgaaagctcgccgagaatcttcggtatgctacc |
24156559 |
T |
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| Q |
201 |
tgttaaaagattttctgaaaaatctataacttgaatctctctgc |
244 |
Q |
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| T |
24156558 |
tgttaaaagattttctgaaaaatctataagttgaatctctctgc |
24156515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 42215337 - 42215111
Alignment:
| Q |
1 |
catgcaaagaacaaattcaagtttctcaaattgccaataagaggaggaatctcaccagtgagagcattgttgtcaacttctagttgagtcaaagaagtgc |
100 |
Q |
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||||||||||| | | ||||||||||||| |||||||||| || ||||||||||||||| | |||||||||||||||||| || ||| |||||||| ||| |
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| T |
42215337 |
catgcaaagaagagagtcaagtttctcaagttgccaataacagaaggaatctcaccagtaatagcattgttgtcaacttccagctgaatcaaagaactgc |
42215238 |
T |
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| Q |
101 |
aatgtgaaatctcaggaggtatgatacctgagagatgattgacactcaattgaagctcttgaagatttgaaagctcgccgagaatcttcggtatgctacc |
200 |
Q |
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| T |
42215237 |
agtttgaaatttcaggtggtataatacctgacaactgattaacactcagttgaagtccttgcagatttgatagctttccaaaactgattggtatgctacc |
42215138 |
T |
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| Q |
201 |
tgttaaaagattttctgaaaaatctat |
227 |
Q |
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||| | |||||||||||| |||||||| |
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| T |
42215137 |
tgtgagaagattttctgacaaatctat |
42215111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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