View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20888_high_12 (Length: 243)
Name: NF20888_high_12
Description: NF20888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20888_high_12 |
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| [»] chr3 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 24157013 - 24156788
Alignment:
| Q |
18 |
ccaatctcatttggaatgctacctgatattctattgtgattcaacctaagcctatagaggtttgtgcagtttcctatatcaggtggtataaagcctgaca |
117 |
Q |
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| T |
24157013 |
ccaatctcatttggaatgttacctgatattctattgtgattcaacctaagcctatagaggtttgtgcagtttcctatatcaggtggtataaagcctgaca |
24156914 |
T |
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| Q |
118 |
aatcattggaaataagcaaaagttttgtgagattcctcaaattaaaaagtgtttttggtattggaccaatcaaattattgtatgaaagatcgagtgactg |
217 |
Q |
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| T |
24156913 |
aatcattggaaataagcaaaagttttgtgagattcctcaaattaaaaagtgtttttggtattggaccaatcaaattattgtatgaaagatcaagtgactg |
24156814 |
T |
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| Q |
218 |
aagttcttgacaatctgaaagactat |
243 |
Q |
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| T |
24156813 |
aagttcttgacaatctgaaagactat |
24156788 |
T |
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Back To:
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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 243
Target Start/End: Complemental strand, 42215531 - 42215367
Alignment:
| Q |
79 |
ttgtgcagtttcctatatcaggtggtataaagcctgacaaatcattggaaataagcaaaagttttgtgagattcctcaaattaaaaagtgtttttggtat |
178 |
Q |
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|||||||||| ||||||||||||||||| || ||| |||||||||||||||||||| ||| | || ||||||||||| ||| ||| ||||||||| |
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| T |
42215531 |
ttgtgcagttacctatatcaggtggtattaatccttccaaatcattggaaataagcataagctgagttagattcctcaacacaaatagttgttttggtat |
42215432 |
T |
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| Q |
179 |
tggaccaatcaaattattgtatgaaagatcgagtgactgaagttcttgacaatctgaaagactat |
243 |
Q |
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| T |
42215431 |
cgaaccagttaggttgttgtatgaaagatcaagtgcctgaagattttgacactctgaaagactat |
42215367 |
T |
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