View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20888_high_4 (Length: 518)

Name: NF20888_high_4
Description: NF20888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20888_high_4
NF20888_high_4
[»] chr8 (10 HSPs)
chr8 (19-363)||(38308144-38308488)
chr8 (371-509)||(38308528-38308665)
chr8 (260-354)||(38325225-38325319)
chr8 (260-347)||(38316380-38316467)
chr8 (282-347)||(38305674-38305739)
chr8 (371-446)||(38313114-38313189)
chr8 (288-347)||(38299761-38299820)
chr8 (371-446)||(38305795-38305867)
chr8 (298-347)||(38313005-38313058)
chr8 (298-346)||(38320516-38320564)
[»] chr4 (1 HSPs)
chr4 (260-347)||(38850878-38850965)


Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 363
Target Start/End: Original strand, 38308144 - 38308488
Alignment:
Q  19 atataatactaatgtttttgacatcttgatgcatcaagacttcttcatagctagaaagtaaaaattgttcaccacatctcnnnnnnnnnnnnnggaagca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||             |||||||    
T  38308144 atataatactaatgtttttgacatcttgatgcatcaagacttcttcatagctagaaagtaaaaattgtttaccacatctcaaaaacaaaaaaaggaagca 38308243  T
Q  119 attctacactctaaagttgtttctacgaagccacattttactgcttagttctctcaaatggattctagattttgtaatgtttgcccaaacaaaatattct 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38308244 attctacactctaaagttgtttctacgaagccacattttactgcttagttctctcaaatggattctagattttgtaatgtttgcccaaacaaaatattct 38308343  T
Q  219 ctgattttcctccactcttttactcattaagtctttattattttgtacacggaagacaaacataagctcaaacaacaactggctaccattcctaataaga 318  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  38308344 ctgattttcctctactcttttactcattaagtctttattattttgtacacggaagagaaacataagctcaaacaacaactggctaccattccttataaga 38308443  T
Q  319 tatctttaacctttgagttgtgggaatcttgtactattgacactt 363  Q
    |||||||||||||||||||||||||||||||||||| || |||||    
T  38308444 tatctttaacctttgagttgtgggaatcttgtactactggcactt 38308488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 371 - 509
Target Start/End: Original strand, 38308528 - 38308665
Alignment:
Q  371 agttaaatagtaagcttttcaatttctgtgttgttttccctcctactggagcctatatgtgtgagagaatggttgaatgattggggaatagagaaaaata 470  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  38308528 agttaaatagtaagcttttcaatttctgtcttgttttccctcctactggagcctatatgtgtgagagaatggttgaatgattggggagtagagaaaaaga 38308627  T
Q  471 nnnnnnncatttactttagatgattcatttgagaataat 509  Q
           ||||||||||||||||||||||||||||||||    
T  38308628 -ttttttcatttactttagatgattcatttgagaataat 38308665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 260 - 354
Target Start/End: Original strand, 38325225 - 38325319
Alignment:
Q  260 tttgtacacggaagacaaacataagctcaaacaacaactggctaccattcctaataagatatctttaacctttgagttgtgggaatcttgtacta 354  Q
    |||||||| | |||| |||  |||||| ||||||||| |||||||||||||||||| | |||||||||| ||||| |||||||||||||| ||||    
T  38325225 tttgtacatgaaagagaaatctaagcttaaacaacaattggctaccattcctaatagggtatctttaacttttgatttgtgggaatcttgcacta 38325319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 260 - 347
Target Start/End: Original strand, 38316380 - 38316467
Alignment:
Q  260 tttgtacacggaagacaaacataagctcaaacaacaactggctaccattcctaataagatatctttaacctttgagttgtgggaatct 347  Q
    |||||||||| |||| ||||  ||||| |||||| || |||||| ||||||||||| |||||||||||| ||||| ||||||||||||    
T  38316380 tttgtacacgaaagagaaactaaagcttaaacaagaattggctagcattcctaataggatatctttaacttttgatttgtgggaatct 38316467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 282 - 347
Target Start/End: Original strand, 38305674 - 38305739
Alignment:
Q  282 aagctcaaacaacaactggctaccattcctaataagatatctttaacctttgagttgtgggaatct 347  Q
    ||||| |||||| || |||||||||||||||||| |||||||||||| ||||| ||||||||||||    
T  38305674 aagcttaaacaagaattggctaccattcctaataggatatctttaacttttgatttgtgggaatct 38305739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 371 - 446
Target Start/End: Original strand, 38313114 - 38313189
Alignment:
Q  371 agttaaatagtaagcttttcaatttctgtgttgttttccctcctactggagcctatatgtgtgagagaatggttga 446  Q
    |||||||||||||  || |||| |||||| |||||| |||||||||||||||  | ||||||||||||||||||||    
T  38313114 agttaaatagtaaagttctcaacttctgtcttgtttaccctcctactggagctgagatgtgtgagagaatggttga 38313189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 288 - 347
Target Start/End: Original strand, 38299761 - 38299820
Alignment:
Q  288 aaacaacaactggctaccattcctaataagatatctttaacctttgagttgtgggaatct 347  Q
    |||||||| |||||||| |||||||||| |||||||||||| |||||  |||||||||||    
T  38299761 aaacaacagctggctactattcctaataggatatctttaacttttgatctgtgggaatct 38299820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 446
Target Start/End: Original strand, 38305795 - 38305867
Alignment:
Q  371 agttaaatagtaagcttttcaatttctgtgttgttttccctcctactggagcctatatgtgtgagagaatggttga 446  Q
    |||||||||||||| || |||| ||||||||||||||    || |||| |||| | ||||||||||||||||||||    
T  38305795 agttaaatagtaaggttctcaacttctgtgttgtttt---acccactgtagccgagatgtgtgagagaatggttga 38305867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 347
Target Start/End: Original strand, 38313005 - 38313058
Alignment:
Q  298 tggctaccattcctaataa----gatatctttaacctttgagttgtgggaatct 347  Q
    |||||||||||||||||||    |||||||||||| ||||| ||||||||||||    
T  38313005 tggctaccattcctaataaataggatatctttaacttttgatttgtgggaatct 38313058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 346
Target Start/End: Original strand, 38320516 - 38320564
Alignment:
Q  298 tggctaccattcctaataagatatctttaacctttgagttgtgggaatc 346  Q
    |||||||||||||||||| ||||||||||||  ||||  ||||||||||    
T  38320516 tggctaccattcctaataggatatctttaactgttgatctgtgggaatc 38320564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 260 - 347
Target Start/End: Complemental strand, 38850965 - 38850878
Alignment:
Q  260 tttgtacacggaagacaaacataagctcaaacaacaactggctaccattcctaataagatatctttaacctttgagttgtgggaatct 347  Q
    |||||||||| |||| |||| |||||| ||||||||| |  ||||||||||||||| |||||||||| | ||||| ||||||||||||    
T  38850965 tttgtacacgaaagagaaacctaagcttaaacaacaattaactaccattcctaataggatatctttatcttttgatttgtgggaatct 38850878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University