View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20888_high_7 (Length: 362)
Name: NF20888_high_7
Description: NF20888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20888_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 35 - 344
Target Start/End: Original strand, 44574483 - 44574793
Alignment:
| Q |
35 |
attggatcattgacacaatgtacatgtattgtgaaaagtgggggctaatgtataggaaaaactaaaatttgagtttgtattcttgaaagaaaatgaattt |
134 |
Q |
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| T |
44574483 |
attggatcattgacacaatgtacatgtattgtgaaaagtgggggctaatgtataggaaaaactaaaatttgagtttgtattcttgaaagaaaatgaattt |
44574582 |
T |
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| Q |
135 |
aactgattgaccaaattataataatgaaggccaaatgtaaccaaatttaaatctaatctctaagctaatccagatagaaaggattcagatgcaaatcata |
234 |
Q |
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| T |
44574583 |
aacagatcgaccaaattataataatgaaggccaaatgtaaccaaatttaaatctaatctctaagctaatccagatagaaaggattcagatgcaaatcata |
44574682 |
T |
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| Q |
235 |
taaaactagaccaaaactaaactacatggtgcttctctaaggaaaaag-atctaacaatagctaaaatagaactagagtttatgaaatttaaactttagc |
333 |
Q |
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| T |
44574683 |
tacaactagaccaaaactaaactacatggtgcttctctaaggaaaaagaatctaacaataactaaaagagaactagagtttatgaaatttaaactttagc |
44574782 |
T |
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| Q |
334 |
agcatgagagt |
344 |
Q |
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| T |
44574783 |
agcatgagagt |
44574793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 70
Target Start/End: Complemental strand, 25383102 - 25383067
Alignment:
| Q |
35 |
attggatcattgacacaatgtacatgtattgtgaaa |
70 |
Q |
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| T |
25383102 |
attggatcattgacacaatgtacatgtattatgaaa |
25383067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 64
Target Start/End: Original strand, 10123310 - 10123339
Alignment:
| Q |
35 |
attggatcattgacacaatgtacatgtatt |
64 |
Q |
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| T |
10123310 |
attggatcattgacacaatgtacatgtatt |
10123339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 64
Target Start/End: Original strand, 28245066 - 28245095
Alignment:
| Q |
35 |
attggatcattgacacaatgtacatgtatt |
64 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
28245066 |
attggatcattgacacaatgtacatgtatt |
28245095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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