View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20888_low_5 (Length: 482)
Name: NF20888_low_5
Description: NF20888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20888_low_5 |
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| [»] scaffold0146 (1 HSPs) |
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| [»] scaffold0139 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 22 - 435
Target Start/End: Original strand, 29024016 - 29024422
Alignment:
| Q |
22 |
ttcttttaatttcttaattttatttttgtggagttctctaagatgataagaatgtgaaaaa-cgtcttctcatcattattttcatcttctcccaagtttc |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29024016 |
ttcttttaatttcttaattttatttttgtggagttctctaagatgataagaatgtgaaaaaacgtcttctcatcattattttcatcttctcccaagtttc |
29024115 |
T |
|
| Q |
121 |
aatggatgactctccataccttattcnnnnnnngatggttcaatctcaccatatcaatgcataatcttttaaatcctggtctacaacctaattcacttct |
220 |
Q |
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|||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29024116 |
aatggatgactctccataccttttttttttttt-atgattcaatctcaccatatcaatgcataatcttttaaatcctggtctacaacct---tcacttct |
29024211 |
T |
|
| Q |
221 |
tgaacattagtataggttttacaagcaaaaattgtttaattttgtcttccttccttacaagctttattgggatccatctttaagcatggaattcaatcca |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29024212 |
tgaacattagtataggttttacaagcaaaaattgtttaattttgtcttccttccttacaagctttattgggatccatctttaagcatggaattcaatcca |
29024311 |
T |
|
| Q |
321 |
cttttatttcaacaaaaacacaccaaacaaagggaacttggtttgggaaacacataagtaatgagaggatcccatggtccatacataatcaaaatactca |
420 |
Q |
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|||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
29024312 |
cttttatttcaacaaaaacatgccaaacaaaggggacttggtttgggaa--acataagtaat--gaggatcccatgttccatacataatcaaaatactca |
29024407 |
T |
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| Q |
421 |
taacaaaaataaact |
435 |
Q |
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|||||||||||||| |
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| T |
29024408 |
caacaaaaataaact |
29024422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 6e-66; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 44 - 385
Target Start/End: Original strand, 36066649 - 36066972
Alignment:
| Q |
44 |
tttttgtggagttctctaagatgataagaatgtgaaaaacgtcttctcatcattattttcatcttctcccaagtttcaatggatgactctccatacctta |
143 |
Q |
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|||||||||||||||| |||| |||||||||||| || || ||||||||||| |||||||||||||| |||||| |||| ||||||||||||| |||| |
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| T |
36066649 |
tttttgtggagttctcaaagaagataagaatgtgccaatcgctttctcatcattgttttcatcttctcctaagttttaatgaatgactctccataactta |
36066748 |
T |
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| Q |
144 |
ttcnnnnnnngatggttcaatctcaccatatcaatgcataatcttttaaatcctggtctacaacctaattcacttcttgaacattagtataggttttaca |
243 |
Q |
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|| |||| || |||| ||||| || ||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
36066749 |
tt-------tgatgatttaatcccacca-----ataaataatcttttaaatcatggtc--caacctg---cacttcttgaacattagtataggttttaca |
36066831 |
T |
|
| Q |
244 |
agcaaaaattgtttaattttgtcttccttccttacaagctttattgggatccatctttaagcatggaattcaatccac-ttttatttcaacaaaaacaca |
342 |
Q |
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|||||||||||||||||||| | |||||||||||||||| |||| |||||||||||||| ||||||||||||||| ||||||||||||||||||| | |
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| T |
36066832 |
agcaaaaattgtttaatttt---tgtcttccttacaagctttcttggtatccatctttaagcgtggaattcaatccactttttatttcaacaaaaacaaa |
36066928 |
T |
|
| Q |
343 |
ccaaacaaa-gggaacttggtttgggaaacacataagtaatgag |
385 |
Q |
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||||||||| |||||||||| ||||||| |||||| |||||||| |
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| T |
36066929 |
ccaaacaaaggggaacttgggttgggaagcacatatgtaatgag |
36066972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 384
Target Start/End: Complemental strand, 47508268 - 47508201
Alignment:
| Q |
318 |
ccacttttatttcaacaaaaa-cacaccaaacaaagggaacttggtttgggaaacacataagtaatga |
384 |
Q |
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| T |
47508268 |
ccacttttatttcaacaaaaaacataccaaagaaagggaacttgggttgggcagcacataggtaatga |
47508201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 55 - 141
Target Start/End: Original strand, 44794077 - 44794163
Alignment:
| Q |
55 |
ttctctaagatgataagaatgtgaaaaacgtcttctcatcattattttcatcttctcccaagtttcaatggatgactctccatacct |
141 |
Q |
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||||||||||||||||||| ||| | |||| || ||||||||| ||||||| | ||||||||||||||||| || |||||||||||| |
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| T |
44794077 |
ttctctaagatgataagaaggtgcataacgcctcctcatcattcttttcatttcctcccaagtttcaatgggtggctctccatacct |
44794163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0146 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0146
Description:
Target: scaffold0146; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 55 - 125
Target Start/End: Complemental strand, 8327 - 8257
Alignment:
| Q |
55 |
ttctctaagatgataagaatgtgaaaaacgtcttctcatcattattttcatcttctcccaagtttcaatgg |
125 |
Q |
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||||||||||||||||||| ||| | |||| || ||||||||| ||||||| | ||||||||||||||||| |
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| T |
8327 |
ttctctaagatgataagaaggtgcataacgcctcctcatcattcttttcatttcctcccaagtttcaatgg |
8257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0139 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0139
Description:
Target: scaffold0139; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 141
Target Start/End: Complemental strand, 5162 - 5076
Alignment:
| Q |
55 |
ttctctaagatgataagaatgtgaaaaacgtcttctcatcattattttcatcttctcccaagtttcaatggatgactctccatacct |
141 |
Q |
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|
||||||||||||||||||| ||| | |||| || ||||||||| ||||||| | |||||||||||||| | || ||||||||||| |
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| T |
5162 |
ttctctaagatgataagaaggtgcataacgcctcctcatcattgttttcatttcttcccaagtttcaatcggtggatctccatacct |
5076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 141
Target Start/End: Complemental strand, 16347816 - 16347730
Alignment:
| Q |
55 |
ttctctaagatgataagaatgtgaaaaacgtcttctcatcattattttcatcttctcccaagtttcaatggatgactctccatacct |
141 |
Q |
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||||||||||||||||||| ||| | |||| || ||||||||| ||||||| | |||||||||||||| | || ||||||||||| |
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| T |
16347816 |
ttctctaagatgataagaaggtgcataacgcctcctcatcattgttttcatttcttcccaagtttcaattggtggatctccatacct |
16347730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 141
Target Start/End: Original strand, 40999606 - 40999692
Alignment:
| Q |
55 |
ttctctaagatgataagaatgtgaaaaacgtcttctcatcattattttcatcttctcccaagtttcaatggatgactctccatacct |
141 |
Q |
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||||||||||||||||||| ||| | |||| || ||||| ||| ||||||| | |||||||||||||| | || ||||||||||| |
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| T |
40999606 |
ttctctaagatgataagaaggtgcataacgcctcctcattattgttttcatttcttcccaagtttcaatcggtggatctccatacct |
40999692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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