View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20888_low_6 (Length: 437)
Name: NF20888_low_6
Description: NF20888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20888_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 16 - 430
Target Start/End: Original strand, 55341068 - 55341482
Alignment:
| Q |
16 |
atattgtccaaaccaattatactcaactcatgtgcttatacacttttgcttgtcttagtttgtttgatactactatttataattttccaattgtcctttt |
115 |
Q |
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| T |
55341068 |
atattgtccaaaccaattatactcaactcatgtgcttatacacttttgcttgtcttagtttgtttgatactaatatttataattttccaatagtcctttt |
55341167 |
T |
|
| Q |
116 |
tatccaaatcatacatgcttcatgaagacaatttggaaaaaagagtaaagggtaaagtatattcagacaagttggtctactttcatttgcttccttccaa |
215 |
Q |
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| T |
55341168 |
tatccaaatcatacatgcttcatgaagacaatttggaaagaagagtaaagggtaaagtatattcagacaagttggtctactttcatttgcttccttccaa |
55341267 |
T |
|
| Q |
216 |
tggaaagaaaggaattaggccagctctgcatccatttcattatataactatccagtttttggattagagacatcataattcatttactaggagctttttt |
315 |
Q |
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| T |
55341268 |
tggaaagaaaggagttaggccagctcggcatccatttcattatataactaaccagtttttggattagagacatcataattcatttactaggagctttttt |
55341367 |
T |
|
| Q |
316 |
atgcagcagcttctcaactttgagcacagtggttagcatcaaaaagacaaaaaccagaacagacacaatacatatcaccagcattaaagcagaggccata |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55341368 |
atgcagcagcttctcaactttgagcacagtggttagcatcaaaaagacaaaaaccagaacagacacaatacatatcaccagcattaaagcagaggccata |
55341467 |
T |
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| Q |
416 |
ctacttttcatctca |
430 |
Q |
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| T |
55341468 |
ctacttttcacctca |
55341482 |
T |
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