View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20889_high_3 (Length: 381)
Name: NF20889_high_3
Description: NF20889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20889_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 17 - 370
Target Start/End: Complemental strand, 25580923 - 25580570
Alignment:
| Q |
17 |
cacaaaaataattaacttcaacaatacaagagtttgaatttgtattatcatttttactacttacttttcaaattaaacaatttcatataaattnnnnnnn |
116 |
Q |
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| T |
25580923 |
cacaaaaataattaacttcaacaatacaagagtttgaatttgtattatcatttttactacttacttttcaaattaaacaatttcatataaattaaaaaaa |
25580824 |
T |
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| Q |
117 |
tagttagttatgcatgaaaagtgaggagttataagttatattaaatattatagaaaaataaacaatatcgattcaaattaatattgtaaaagaacttatt |
216 |
Q |
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| T |
25580823 |
tagttagttatgcatgaaaagtgaggagttataagttatattaaatattatagaaaaataaacaatatcgattcaaattgatattgtaaaagaacttatt |
25580724 |
T |
|
| Q |
217 |
gaatgagacaatttagttttgaaatatgaagggattatgcattttgataggttgtttggactaattctaattaaatctatcttttcttttacattgttaa |
316 |
Q |
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| T |
25580723 |
gaatgagacaatttagttttgaaatatgaagggattatgcattttgataggttgtttggactaattctaattaaatctatcttttcttttacattgttaa |
25580624 |
T |
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| Q |
317 |
attaaaggagaaattccaaaagggatgttccgggatcttacacagctcagaata |
370 |
Q |
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| T |
25580623 |
attaaaggagaaattccaaaagggatgttccgggatcttacacagctcagaata |
25580570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 303 - 366
Target Start/End: Complemental strand, 25596110 - 25596047
Alignment:
| Q |
303 |
ttttacattgttaaattaaaggagaaattccaaaagggatgttccgggatcttacacagctcag |
366 |
Q |
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| T |
25596110 |
ttttacattgttgaattaaaggagaaattccaaaagggatctttagggatcttacacagctcag |
25596047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 278 - 368
Target Start/End: Original strand, 24870729 - 24870820
Alignment:
| Q |
278 |
taattctaattaaatctatct-tttcttttacattgttaaattaaaggagaaattccaaaagggatgttccgggatcttacacagctcagaa |
368 |
Q |
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| T |
24870729 |
taattctaattaagtctttgtctttcttttacatcgttgaattaaaggagaaattccaaaagggatctttggagatcttacagagcttagaa |
24870820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 302 - 360
Target Start/End: Complemental strand, 23260906 - 23260848
Alignment:
| Q |
302 |
cttttacattgttaaattaaaggagaaattccaaaagggatgttccgggatcttacaca |
360 |
Q |
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| T |
23260906 |
cttttatattgttgaattaaaggagaaattccaaaagggatcttcgaggatcttacaca |
23260848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 342
Target Start/End: Complemental strand, 25627699 - 25627660
Alignment:
| Q |
303 |
ttttacattgttaaattaaaggagaaattccaaaagggat |
342 |
Q |
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| T |
25627699 |
tttttcattgttaaattaaaggtgaaattccaaaagggat |
25627660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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