View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20889_high_4 (Length: 371)
Name: NF20889_high_4
Description: NF20889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20889_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 26380792 - 26381146
Alignment:
| Q |
1 |
ttcaacaagagggtcttcttttggaatggagaatgatttaggatcatgggatgttacaacaaatcctatcatgtacactactactccaaatgtaaacaat |
100 |
Q |
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| T |
26380792 |
ttcaccaagagggtcttcttttggaatggagaatgatttaggatcatgggatgttacaacaaatcctatcatgtacactactactccaaatgtaaacaat |
26380891 |
T |
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| Q |
101 |
gttccttcaacaccactttattttccctccaataggggacttcaacagcttcctcaatctctttatcctactagacctattgaggaaccagtggctttta |
200 |
Q |
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|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26380892 |
gttccttcaacaccactttattttccttctaataggggacttcaacagcttcctcaatctctttatcctactagacctattgaggaaccagtggctttta |
26380991 |
T |
|
| Q |
201 |
aatgtgataatagttttatctttcaagagaatgacatgaaaaatgagtgcaataattcattgttggctggtagtggtgttggtggtggtggtagaaagtt |
300 |
Q |
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| T |
26380992 |
aatgtgataatagttttatctttcaagagaatgacatgaaaaatgagtgcaataattcattgttggctggtagtggtgttggtggtggtggtagaaagtt |
26381091 |
T |
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| Q |
301 |
ttcagtttcacactcacaagaggcagtgattcctcaagtttctcatttgcctagt |
355 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
26381092 |
ttcagtttcacactcacaagaggcggtgattcctcaagtttctcatttgcctagt |
26381146 |
T |
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