View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20889_low_1 (Length: 803)
Name: NF20889_low_1
Description: NF20889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20889_low_1 |
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| [»] scaffold0338 (1 HSPs) |
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| [»] scaffold0035 (1 HSPs) |
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| [»] scaffold0171 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 459 - 786
Target Start/End: Complemental strand, 13115390 - 13115069
Alignment:
| Q |
459 |
aaagtatattattgccacttaacataactattgaatatggc-catattnnnnnnnnnnnnnncaagtgggagttttaggtatattcctttgcccccaggc |
557 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||| ||||| |||||||||||| ||| |
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| T |
13115390 |
aaagtatattattgccacttaacataactattgaatatagctcatattaaaaaaaa------caagtgggagtttaaggtacgttcctttgcccct-ggc |
13115298 |
T |
|
| Q |
558 |
gtaaatgtgcggcgaggtctataaagagggagttttagcacaagtttgaatgttgaaaaatgctttagaagatatggaatgaagattgtcgatgaataag |
657 |
Q |
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| |||| ||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
13115297 |
gcaaattcgcgacgaggtctataaagagggagttttagcaccagtttgaatgttaaaaaatgctttagaagatatggaatgaagattgtcaatgaataag |
13115198 |
T |
|
| Q |
658 |
gctttgaagacatcataagatgggaaaattttgtcccaagatcaatttgcataaagaaaacactcaaagtacgacgaataaggggaaatcagtacctgca |
757 |
Q |
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|||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
13115197 |
gctttgaagacatcataagatgcggaaattttgtcccaagatcaattcgcataaagaaaacactcaaagtacgacgaatagggggaaatcagtacctgca |
13115098 |
T |
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| Q |
758 |
cctgaagccacattcctcaagatcttgct |
786 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
13115097 |
cctgaagccacattcctcaagatcttgct |
13115069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 11 - 191
Target Start/End: Complemental strand, 13123513 - 13123336
Alignment:
| Q |
11 |
catcatcatattctcaaattatgcataagttggttttcataaaacttgcagcagaataatcatcatacataattaggtctgatcacatacataataatag |
110 |
Q |
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|||||||||||||||||| |||||||| ||||||||||| | ||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
13123513 |
catcatcatattctcaaaacatgcataaattggttttcattatacttgcagcggaaaaatcatcatacataattaggtct---cacatacataataatag |
13123417 |
T |
|
| Q |
111 |
tctcagcagataaatccataaacaaataaatgacataaaacaaaagttccgacactcccaaatcagagcctaactagactc |
191 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
13123416 |
tctcagcagataaatccataaacaaataaacgacataaaacaaaagtcccgacactcccatatcagagcctaactagactc |
13123336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 282 - 391
Target Start/End: Complemental strand, 13115604 - 13115497
Alignment:
| Q |
282 |
catccacatttgagatagaatatgtggctttgcaatatatccttccatgcctataaattggttgaactacttgatggctcctaaggacatgattgaatta |
381 |
Q |
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||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
13115604 |
catccacatttgagaaa--atatgtggctttgcaatatatccttccatgcctataaattggttgaactacttgatggctcccaaggacaagattgaatta |
13115507 |
T |
|
| Q |
382 |
ttcgtatcta |
391 |
Q |
| |
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|||||||||| |
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| T |
13115506 |
ttcgtatcta |
13115497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 13123339 - 13123295
Alignment:
| Q |
208 |
actccaagttaatcctcaagccctcacaagcaataagaaatcaat |
252 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
13123339 |
actccaagttaatcctcaagcactcacaagcaataagaaatcaat |
13123295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 20891677 - 20891733
Alignment:
| Q |
197 |
gataagaggtaactccaagttaatcctcaagccctcacaagcaataagaaatcaatc |
253 |
Q |
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||||||||||| ||||||| || ||||| || |||||||||||||||||||||||| |
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| T |
20891677 |
gataagaggtagctccaagctagtcctcgagtactcacaagcaataagaaatcaatc |
20891733 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0338 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0338
Description:
Target: scaffold0338; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 18720 - 18667
Alignment:
| Q |
200 |
aagaggtaactccaagttaatcctcaagccctcacaagcaataagaaatcaatc |
253 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||| |||||||| |||||| |
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|
| T |
18720 |
aagaggtaactccaagctaatcctcaagcactcacaagaaataagaactcaatc |
18667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 71468 - 71415
Alignment:
| Q |
194 |
aaagataag-aggtaactccaagttaatcctcaagccctcacaagcaataagaa |
246 |
Q |
| |
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||||||||| ||||| ||||||| |||||||||||| ||||||||||||||||| |
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| T |
71468 |
aaagataaggaggtagctccaagctaatcctcaagcactcacaagcaataagaa |
71415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 15061947 - 15062000
Alignment:
| Q |
200 |
aagaggtaactccaagttaatcctcaagccctcacaagcaataagaaatcaatc |
253 |
Q |
| |
|
|||||||| ||||||| |||||||||||| ||||||||||||| ||| |||||| |
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| T |
15061947 |
aagaggtagctccaagctaatcctcaagcactcacaagcaataggaactcaatc |
15062000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 24474453 - 24474409
Alignment:
| Q |
10 |
acatcatcatattctcaaattatgcataagttggttttcataaaa |
54 |
Q |
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||||| |||| |||||||||||||||||| ||||||||||||||| |
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| T |
24474453 |
acatcttcattttctcaaattatgcataaattggttttcataaaa |
24474409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 191
Target Start/End: Original strand, 2732 - 2770
Alignment:
| Q |
153 |
aaagttccgacactcccaaatcagagcctaactagactc |
191 |
Q |
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||||| |||||||||| |||||||||||||||||||||| |
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| T |
2732 |
aaagtcccgacactcctaaatcagagcctaactagactc |
2770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 254
Target Start/End: Complemental strand, 16592382 - 16592321
Alignment:
| Q |
194 |
aaagataag-aggtaactccaagttaatcctcaagccctcacaagcaataagaaatcaatcc |
254 |
Q |
| |
|
||||||||| ||||| |||||| |||| |||||||| ||||| ||||||||||| ||||||| |
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|
| T |
16592382 |
aaagataaggaggtagctccaaattaaccctcaagcactcactagcaataagaactcaatcc |
16592321 |
T |
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