View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20889_low_2 (Length: 621)
Name: NF20889_low_2
Description: NF20889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20889_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 62 - 399
Target Start/End: Original strand, 6586582 - 6586918
Alignment:
| Q |
62 |
taggctaaaatttgctggtcaattgtagtcttcacacgaaatgtaaataacataagtatgtcaatctcatcgaatgatctcttaaataagtcaaaccaaa |
161 |
Q |
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| T |
6586582 |
taggctaaaatttgctggtcaattgtagtct-cacaccaaatgtaaataacatgagtatgtcaatctcatcgaatgatctcttaaataagtcaaaccaaa |
6586680 |
T |
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| Q |
162 |
gaaagaatggtttcattaatcttattattgttaacaatcatatcctgatatccataaacacattcgagtaaatctcaacaatcaaatgagataaaccatc |
261 |
Q |
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| T |
6586681 |
gaaagaatggtttcattaatcttattattgttaacaattatatcctgatatccataaacacattcgagtaaatctcaacaatcaaatgagataaaccatc |
6586780 |
T |
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| Q |
262 |
tctccaaattatatcaaacccaaccatacaatttaatgattattacatatccattactgtatctaatctaagtaatttaataattaaaatttctccctaa |
361 |
Q |
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| T |
6586781 |
tctccaaattatatcaaacccaaccatacaatttaatgattattacatatccattactgtatctaatctaagtaatttaataattagaatttctccctaa |
6586880 |
T |
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| Q |
362 |
gttgacattctttacccaccatgaaacccacgtaatca |
399 |
Q |
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| T |
6586881 |
gttgacattctttacccaccatgaaacccacgtaatca |
6586918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 402 - 617
Target Start/End: Original strand, 6586951 - 6587167
Alignment:
| Q |
402 |
tcacattcctcccccattttccccctctaattctcgtggtcccacttttggcactgatcggcttatctgtatgggcctatggtagattctttgtcacaca |
501 |
Q |
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| T |
6586951 |
tcacattcctccctcattttccccctctaattctcgtggtcccacttttggcactgatcggcttatctgtatgggcctatggtagattctttgtcacaca |
6587050 |
T |
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| Q |
502 |
agtagaagtagccatgtgtatataatgaagtaaagcaccacacaagtccctatcaaatcaaggata-ttaaccccatcaactcatggaattagaactttc |
600 |
Q |
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| T |
6587051 |
agtagaagtagccatgtgtatataatgaagtaaagcaccacacaggttcctatcaaatcaaggatatttaaccccatcaactcatggaattagaactttc |
6587150 |
T |
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| Q |
601 |
accttttcatctctctc |
617 |
Q |
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| T |
6587151 |
accttttcatcactctc |
6587167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 24191173 - 24191107
Alignment:
| Q |
107 |
aataacataagtatgtcaatctcatcgaatgatctcttaaataagtcaaaccaaagaaagaatggtt |
173 |
Q |
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| T |
24191173 |
aataacttaagtatgtcaatctcatcgaaagatcccttgaatacgccaaaccaaagaaggaatggtt |
24191107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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