View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20889_low_5 (Length: 304)
Name: NF20889_low_5
Description: NF20889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20889_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-147; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 13095468 - 13095186
Alignment:
| Q |
1 |
aaagaagaatgttggcaactacgcgaaagggtcaaaattccatgatatttttgaagttcttggaggtagtattttcaattctgattccgacgatgtatgg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13095468 |
aaagaagaatgttggcaactacgcgaaagggtcaaaattccatgatatttttgaagttcttggaggtagtattttcaattctgattccgacgatgtatgg |
13095369 |
T |
|
| Q |
101 |
aaacaggagaagacaatgtttcatttaattcttggaaggaaaagattcaagaacatgttcgaacaatccattcagaagaaggtggataactacctcatac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||| |||| |
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| T |
13095368 |
aaacaggagaagacaatgtttcatttaattcttggaaggaaaagcttcaagaacatggtcgaacaatccattcagaagaaggtggagaactacctgatac |
13095269 |
T |
|
| Q |
201 |
catttcttaatgatgtatctgaagcaggagctcaggtggatttgcaagatgcctttaataggttcacctttgatagcacctgc |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
13095268 |
catttcttaatgatgtatctgaagcaggagctcaggtggatttgcaagatgcctttaataggttcacctttgatagcagctgc |
13095186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 13162590 - 13162308
Alignment:
| Q |
1 |
aaagaagaatgttggcaactacgcgaaagggtcaaaattccatgatatttttgaagttcttggaggtagtattttcaattctgattccgacgatgtatgg |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
13162590 |
aaagaagaattttggcaactacgcgaaagggtcaaaattccatgatatttttgaagttcttggaggtagtattttcaattctgattccaacgatgtatgg |
13162491 |
T |
|
| Q |
101 |
aaacaggagaagacaatgtttcatttaattcttggaaggaaaagattcaagaacatgttcgaacaatccattcagaagaaggtggataactacctcatac |
200 |
Q |
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| T |
13162490 |
aaacaggagaagacaatgtttcatttagttcttggaaggaaaagcttcaagaacatgttccaacattccattcagaagaaggtggacgactatctaatac |
13162391 |
T |
|
| Q |
201 |
catttcttaatgatgtatctgaagcaggagctcaggtggatttgcaagatgcctttaataggttcacctttgatagcacctgc |
283 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
13162390 |
catttcttaatgatgtatctgaagcaggagctcaggtggatttgcaagatgcctttaataggttcacctttgatagcagctgc |
13162308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 13130897 - 13130615
Alignment:
| Q |
1 |
aaagaagaatgttggcaactacgcgaaagggtcaaaattccatgatatttttgaagttcttggaggtagtattttcaattctgattccgacgatgtatgg |
100 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13130897 |
aaagaagaattgtggcaactacaggaaagggtcaaaatatcatgacatttttgaagttcttggaggtagtattttcaattctgattccgacgatgtatgg |
13130798 |
T |
|
| Q |
101 |
aaacaggagaagacaatgtttcatttaattcttggaaggaaaagattcaagaacatgttcgaacaatccattcagaagaaggtggataactacctcatac |
200 |
Q |
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||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
13130797 |
aaacaagagaagacaatgtttcatttagttcttggaaggaaaagcttcaagaacatgttcgaacaatccattcagaagaaggtggagaactacctgatac |
13130698 |
T |
|
| Q |
201 |
catttcttaatgatgtatctgaagcaggagctcaggtggatttgcaagatgcctttaataggttcacctttgatagcacctgc |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
13130697 |
catttcttaatgatgtatctgaagcaggagctcatgtggatttgcaagatgcctttaataggttcacctttgatagcagctgc |
13130615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 38 - 283
Target Start/End: Original strand, 30367268 - 30367510
Alignment:
| Q |
38 |
ttccatgatatttttgaagttcttggaggtagtattttcaattctgattccgacgatgtatggaaacaggagaagacaatgtttcatttaattcttggaa |
137 |
Q |
| |
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||||| || ||||||||| || |||||||| ||||| |||||||||||||| ||| |||||||| || ||| | |||||||||||| |||||| || |
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| T |
30367268 |
ttccaagaaatttttgaattttttggaggtggtattgtcaattctgattcccacg---tatggaaagagaagagggcaatgtttcattcaattctcaaaa |
30367364 |
T |
|
| Q |
138 |
ggaaaagattcaagaacatgttcgaacaatccattcagaagaaggtggataactacctcataccatttcttaatgatgtatctgaagcaggagctcaggt |
237 |
Q |
| |
|
||||||| ||||||||| ||||| ||||| | | | | || ||| |||| || | ||| |||||||| |||||||||||||||||||||| || |||| |
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| T |
30367365 |
ggaaaagcttcaagaacttgttccaacaaactagtaaaaaaaagctggagaaattcctactaccatttattaatgatgtatctgaagcaggttctgaggt |
30367464 |
T |
|
| Q |
238 |
ggatttgcaagatgcctttaataggttcacctttgatagcacctgc |
283 |
Q |
| |
|
||| ||||||||| ||| ||||||||||| ||||| |||| |||| |
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| T |
30367465 |
ggacttgcaagatatcttgaataggttcacttttgacagcatctgc |
30367510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 283
Target Start/End: Original strand, 13069318 - 13069593
Alignment:
| Q |
5 |
aagaatgttggcaactacgcgaaagggtcaaaattccatgatatttttgaagttcttggaggtagtattttcaattctgattccgacgatgtatggaaac |
104 |
Q |
| |
|
|||||| |||||||||||| | ||||| || ||| | || |||||||| || |||||| | ||||||| |||||| ||||| ||| ||||||||| |
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| T |
13069318 |
aagaattttggcaactacggaagggggtccaacttcaaagaaatttttgatttttttggagatggtattttaaattctaattcccacg---tatggaaac |
13069414 |
T |
|
| Q |
105 |
aggagaagacaatgtttcatttaattcttggaaggaaaagattcaagaacatgttcgaacaatccattcagaagaaggtggataactacctcataccatt |
204 |
Q |
| |
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| ||| |||||||||||||| | ||||| |||||||| ||||||||| | ||| ||||| | || |||| ||| |||| |||||||| ||||||| |
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| T |
13069415 |
aacagaggacaatgtttcattcatttcttaaaaggaaaaccttcaagaacttcttccaacaaactatgaagaaaaagctggagaactacctactaccatt |
13069514 |
T |
|
| Q |
205 |
tcttaatgatgtatctgaagcaggagctcaggtggatttgcaagatgcctttaataggttcacctttgatagcacctgc |
283 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||| || | |||||||| | ||||||||| |||||||||| |||| |
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|
| T |
13069515 |
tcttaatgatgtatctgaaataggtgctcaggtggacctggaggatgccttgagtaggttcacttttgatagcatctgc |
13069593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 115 - 278
Target Start/End: Complemental strand, 14708384 - 14708221
Alignment:
| Q |
115 |
aatgtttcatttaattcttggaaggaaaagattcaagaacatgttcgaacaatccattcagaagaaggtggataactacctcataccatttcttaatgat |
214 |
Q |
| |
|
|||||||||||||||| | || |||||| ||||||||| | ||| ||||| |||||||||||| | |||| || | | | |||||||||||||| || |
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|
| T |
14708384 |
aatgtttcatttaattatcaaaaagaaaagcttcaagaacttcttccaacaaaccattcagaagaggttggaaaattgcttactaccatttcttaatcat |
14708285 |
T |
|
| Q |
215 |
gtatctgaagcaggagctcaggtggatttgcaagatgcctttaataggttcacctttgatagca |
278 |
Q |
| |
|
||||| |||| ||| |||||||||||||| ||||||| ||| ||||||||||| ||||| |||| |
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| T |
14708284 |
gtatcagaagtaggtgctcaggtggatttacaagatgtcttgaataggttcacttttgacagca |
14708221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 283
Target Start/End: Complemental strand, 13205521 - 13205246
Alignment:
| Q |
5 |
aagaatgttggcaactacgcgaaagggtcaaaattccatgatatttttgaagttcttggaggtagtattttcaattctgattccgacgatgtatggaaac |
104 |
Q |
| |
|
|||||| |||||||||||| | ||||| || ||| | || |||||||| || |||||| | ||||||| |||||| ||||| ||| ||||||||| |
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|
| T |
13205521 |
aagaattttggcaactacggaagggggtccaacttcaaagaaatttttgatttttttggagatggtattttaaattctaattccaacg---tatggaaac |
13205425 |
T |
|
| Q |
105 |
aggagaagacaatgtttcatttaattcttggaaggaaaagattcaagaacatgttcgaacaatccattcagaagaaggtggataactacctcataccatt |
204 |
Q |
| |
|
| ||| |||||||||||||| | |||| |||||||| ||||||||| | ||| ||||| | || |||| ||| |||| |||||||| ||||||| |
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|
| T |
13205424 |
aacagaggacaatgtttcattcatttctcaaaaggaaaaccttcaagaacttcttccaacaaactatgaagaaaaagctggagaactacctactaccatt |
13205325 |
T |
|
| Q |
205 |
tcttaatgatgtatctgaagcaggagctcaggtggatttgcaagatgcctttaataggttcacctttgatagcacctgc |
283 |
Q |
| |
|
|||| |||||||||||||| ||| |||||| |||| || | |||||||| | ||||||||| |||||||||| |||| |
|
|
| T |
13205324 |
tcttgatgatgtatctgaaataggtgctcagctggacctggaggatgccttgagtaggttcacttttgatagcatctgc |
13205246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 283
Target Start/End: Complemental strand, 13008145 - 13007975
Alignment:
| Q |
113 |
acaatgtttcatttaattcttggaaggaaaagattcaagaacatgttcgaacaatccattcagaagaaggtggataactacctcataccatttcttaatg |
212 |
Q |
| |
|
||||||||||||| | |||| |||||||| ||||||||| | ||| ||||| | || |||| |||||||| |||| | | ||||||||||||||| |
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|
| T |
13008145 |
acaatgtttcattcatttctcaaaaggaaaaccttcaagaactttttccaacaaactatgaagaaaaaggtggagaactgcttactaccatttcttaatg |
13008046 |
T |
|
| Q |
213 |
atgtatctgaagcaggagctcaggtggatttgcaagatgcctttaataggttcacctttgatagcacctgc |
283 |
Q |
| |
|
||||||||||| ||| ||||||||||| || | |||||||| | ||||||||| ||||| |||| |||| |
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|
| T |
13008045 |
atgtatctgaaataggtgctcaggtggacctggaggatgccttgagtaggttcacttttgacagcatctgc |
13007975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 267
Target Start/End: Original strand, 13067510 - 13067567
Alignment:
| Q |
210 |
atgatgtatctgaagcaggagctcaggtggatttgcaagatgcctttaataggttcac |
267 |
Q |
| |
|
||||||| ||||||||||| |||||||||| |||||||||||||| | ||||||||| |
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|
| T |
13067510 |
atgatgtgtctgaagcaggttctcaggtggacttgcaagatgccttgagtaggttcac |
13067567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 283
Target Start/End: Complemental strand, 13101860 - 13101775
Alignment:
| Q |
198 |
taccatttcttaatgatgtatctgaagcaggagctcaggtggatttgcaagatgcctttaataggttcacctttgatagcacctgc |
283 |
Q |
| |
|
|||| ||||||||||||||||||||| ||| ||||| ||||| || | |||| ||||| ||||||||| ||||| |||| |||| |
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|
| T |
13101860 |
taccgtttcttaatgatgtatctgaaataggtgctcatgtggacctggaggatgtctttagtaggttcacttttgacagcatctgc |
13101775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 38 - 159
Target Start/End: Complemental strand, 31376527 - 31376409
Alignment:
| Q |
38 |
ttccatgatatttttgaagttcttggaggtagtattttcaattctgattccgacgatgtatggaaacaggagaagacaatgtttcatttaattcttggaa |
137 |
Q |
| |
|
||||| || ||||||||| || |||||||| ||||| |||||||||||||| ||| |||||||| || ||| |||||||||||||| |||||| || |
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|
| T |
31376527 |
ttccaagaaatttttgaattttttggaggtggtattgtcaattctgattcccacg---tatggaaagagaagaggacaatgtttcattcaattctcaaaa |
31376431 |
T |
|
| Q |
138 |
ggaaaagattcaagaacatgtt |
159 |
Q |
| |
|
||||||| ||||||||| |||| |
|
|
| T |
31376430 |
ggaaaagcttcaagaacttgtt |
31376409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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