View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20889_low_8 (Length: 219)

Name: NF20889_low_8
Description: NF20889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20889_low_8
NF20889_low_8
[»] chr5 (3 HSPs)
chr5 (29-213)||(26380277-26380461)
chr5 (169-213)||(5348289-5348333)
chr5 (169-213)||(36429858-36429902)
[»] scaffold0102 (1 HSPs)
scaffold0102 (169-213)||(32928-32972)
[»] chr8 (2 HSPs)
chr8 (169-213)||(14791243-14791287)
chr8 (169-213)||(20111794-20111838)
[»] chr7 (1 HSPs)
chr7 (169-213)||(36067891-36067935)
[»] chr6 (4 HSPs)
chr6 (169-213)||(6008940-6008984)
chr6 (169-213)||(15347998-15348042)
chr6 (169-213)||(17732321-17732365)
chr6 (169-213)||(30710069-30710113)
[»] chr4 (1 HSPs)
chr4 (169-213)||(27455496-27455540)
[»] chr3 (3 HSPs)
chr3 (169-213)||(47471269-47471313)
chr3 (169-213)||(50837763-50837807)
chr3 (169-213)||(54560599-54560643)
[»] chr2 (2 HSPs)
chr2 (169-213)||(4593185-4593229)
chr2 (169-213)||(10256273-10256317)
[»] chr1 (1 HSPs)
chr1 (172-213)||(47445290-47445331)


Alignment Details
Target: chr5 (Bit Score: 173; Significance: 3e-93; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 29 - 213
Target Start/End: Complemental strand, 26380461 - 26380277
Alignment:
Q  29 ttgttgtatgcatgagattcccaaaaacgaggcatgttagtgaatgattcaacaagattgttattactattattacctctgattctggacatgttgttaa 128  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26380461 ttgttgtatgcatgagattcccaaaaacaaggcatgttagtgaatggttcaacaagattgttattactattattacctctgattctggacatgttgttaa 26380362  T
Q  129 caacgttgctaggttgagaatgttgttgatgatgatcttcatccaaaagggtcattgcagaaagatcaagagacaattgatgatg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26380361 caacgttgctaggttgagaatgttgttgatgatgatcttcatccaaaagggtcattgcagagagatcaagagacaattgatgatg 26380277  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 5348333 - 5348289
Alignment:
Q  169 atccaaaagggtcattgcagaaagatcaagagacaattgatgatg 213  Q
    ||||||||||||| | |||||||||||||||||||||||||||||    
T  5348333 atccaaaagggtcgtagcagaaagatcaagagacaattgatgatg 5348289  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 36429902 - 36429858
Alignment:
Q  169 atccaaaagggtcattgcagaaagatcaagagacaattgatgatg 213  Q
    ||||||||||||| | |||||||||||||||||||||||||||||    
T  36429902 atccaaaagggtcgtagcagaaagatcaagagacaattgatgatg 36429858  T

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Target: scaffold0102 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 32972 - 32928
Alignment:
Q  169 atccaaaagggtcattgcagaaagatcaagagacaattgatgatg 213  Q
    ||||||||||||| | |||||||||||||||||||||||||||||    
T  32972 atccaaaagggtcgtagcagaaagatcaagagacaattgatgatg 32928  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 14791287 - 14791243
Alignment:
Q  169 atccaaaagggtcattgcagaaagatcaagagacaattgatgatg 213  Q
    ||||||||||||| | |||||||||||||||||||||||||||||    
T  14791287 atccaaaagggtcgtagcagaaagatcaagagacaattgatgatg 14791243  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 20111794 - 20111838
Alignment:
Q  169 atccaaaagggtcattgcagaaagatcaagagacaattgatgatg 213  Q
    ||||||||||||| | |||||||||||||||||||||||||||||    
T  20111794 atccaaaagggtcgtggcagaaagatcaagagacaattgatgatg 20111838  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 36067935 - 36067891
Alignment:
Q  169 atccaaaagggtcattgcagaaagatcaagagacaattgatgatg 213  Q
    ||||||||||||| | |||||||||||||||||||||||||||||    
T  36067935 atccaaaagggtcgtagcagaaagatcaagagacaattgatgatg 36067891  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 6008940 - 6008984
Alignment:
Q  169 atccaaaagggtcattgcagaaagatcaagagacaattgatgatg 213  Q
    ||||||||||||| | |||||||||||||||||||||||||||||    
T  6008940 atccaaaagggtcgtagcagaaagatcaagagacaattgatgatg 6008984  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 15348042 - 15347998
Alignment:
Q  169 atccaaaagggtcattgcagaaagatcaagagacaattgatgatg 213  Q
    ||||||||||||| | |||||||||||||||||||||||||||||    
T  15348042 atccaaaagggtcgtagcagaaagatcaagagacaattgatgatg 15347998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 17732321 - 17732365
Alignment:
Q  169 atccaaaagggtcattgcagaaagatcaagagacaattgatgatg 213  Q
    ||||||||||||| | |||||||||||||||||||||||||||||    
T  17732321 atccaaaagggtcgtagcagaaagatcaagagacaattgatgatg 17732365  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 30710113 - 30710069
Alignment:
Q  169 atccaaaagggtcattgcagaaagatcaagagacaattgatgatg 213  Q
    ||||||||||||| | |||||||||||||||||||||||||||||    
T  30710113 atccaaaagggtcgtagcagaaagatcaagagacaattgatgatg 30710069  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 27455540 - 27455496
Alignment:
Q  169 atccaaaagggtcattgcagaaagatcaagagacaattgatgatg 213  Q
    ||||||||||||| | |||||||||||||||||||||||||||||    
T  27455540 atccaaaagggtcgtagcagaaagatcaagagacaattgatgatg 27455496  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 47471313 - 47471269
Alignment:
Q  169 atccaaaagggtcattgcagaaagatcaagagacaattgatgatg 213  Q
    ||||||||||||| | |||||||||||||||||||||||||||||    
T  47471313 atccaaaagggtcgtagcagaaagatcaagagacaattgatgatg 47471269  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 50837763 - 50837807
Alignment:
Q  169 atccaaaagggtcattgcagaaagatcaagagacaattgatgatg 213  Q
    ||||||||||||| | |||||||||||||||||||||||||||||    
T  50837763 atccaaaagggtcgtagcagaaagatcaagagacaattgatgatg 50837807  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 54560643 - 54560599
Alignment:
Q  169 atccaaaagggtcattgcagaaagatcaagagacaattgatgatg 213  Q
    ||||||||||||| | |||||||||||||||||||||||||||||    
T  54560643 atccaaaagggtcgtagcagaaagatcaagagacaattgatgatg 54560599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 4593229 - 4593185
Alignment:
Q  169 atccaaaagggtcattgcagaaagatcaagagacaattgatgatg 213  Q
    ||||||||||||| | |||||||||||||||||||||||||||||    
T  4593229 atccaaaagggtcgtagcagaaagatcaagagacaattgatgatg 4593185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 10256317 - 10256273
Alignment:
Q  169 atccaaaagggtcattgcagaaagatcaagagacaattgatgatg 213  Q
    ||||||||||||| | |||||||||||||||||||||||||||||    
T  10256317 atccaaaagggtcgtagcagaaagatcaagagacaattgatgatg 10256273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 172 - 213
Target Start/End: Original strand, 47445290 - 47445331
Alignment:
Q  172 caaaagggtcattgcagaaagatcaagagacaattgatgatg 213  Q
    |||||||||| | |||||||||||||||||||||| ||||||    
T  47445290 caaaagggtcgtagcagaaagatcaagagacaatttatgatg 47445331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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