View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2088_low_2 (Length: 635)
Name: NF2088_low_2
Description: NF2088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2088_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 33654624 - 33655039
Alignment:
| Q |
1 |
atcaaaagaagattctggaaagcatcccagttgttatcaccttttatgccgttggaatcagcattccttgaaccatttagcatgtcatggggctttgcgc |
100 |
Q |
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| T |
33654624 |
atcaaaagaagattctggaaagcatcccagttgttatcaccttttatgccgatggaatcagcattccttgaaccatttagcatgtcatggggctttgcgc |
33654723 |
T |
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| Q |
101 |
tatgttgtttcttatgctgacgagaggttgacctgtttcttttatccagtgacgcaacagcttcctctaccttgtgtttcaaggaatttccattgataaa |
200 |
Q |
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| T |
33654724 |
tatgttgtttcttatgctgacgagaggttggcctgtttcttttctccagtgacgcaacagcttcctctaccttgtgtttcaaggaatttccattgataaa |
33654823 |
T |
|
| Q |
201 |
ttcttcctcattcgacaaactcccttcagtgatactacctttttctccgtctccattggaagttatatagtttatgttacggataactaccttccttgac |
300 |
Q |
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| T |
33654824 |
ttcttcctcattcgacaaactcccttcagtgatactacctttttctccgtctcccttggaagttatatagtttatgttacggataactactttccttgac |
33654923 |
T |
|
| Q |
301 |
gatttctttccatgtttcttgttgcttcgctttgaattgtcatctgaatcactctcataagtagactcagaggatgcagttgactcgtcttcttcagagt |
400 |
Q |
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| T |
33654924 |
gacttctttccatgtttcttgttgcttcgctttgaattgtcatctgaatcactctcataagtagactcagaggatgcagttgactcgtcttcttcagagt |
33655023 |
T |
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| Q |
401 |
gatccaatacctgaga |
416 |
Q |
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| T |
33655024 |
gatccaatacctgaga |
33655039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 444 - 620
Target Start/End: Original strand, 33655067 - 33655243
Alignment:
| Q |
444 |
atgagaatccatttcttggtcatgaacgatgtgagagcgatccccgtttggaggccattgcatattcccaggataatacggagacggaacctgcatacca |
543 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33655067 |
atgagaatccatttcttggtcatgaacaatgtgagagcgatccccgtttggaggccattgcatattcccaggataatacggagacggaacctgcatacca |
33655166 |
T |
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| Q |
544 |
ggatacatgtatccttggtatggaggtgtttgttgaaatccatgaccctgaaaattgtgaatgtagtgtggatgatg |
620 |
Q |
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| T |
33655167 |
ggatacatgtatccttggtatggaggcgtttgttgaaatgcatgaccctgaaaattgtgaatgtactgtggatgatg |
33655243 |
T |
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