View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2088_low_3 (Length: 362)
Name: NF2088_low_3
Description: NF2088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2088_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 346
Target Start/End: Complemental strand, 44348264 - 44347937
Alignment:
| Q |
19 |
caagttaccttttcagtttgccaacaaatattcaaatcaacacttctcaaatgtaattacttttcatatcatacctaatttgtttggtacttttgggtga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44348264 |
caagttaccttttcagtttgccaacaaatattcaaatcaacacttctcaaatgtaattacttttcatatcatacctaatttgtttggtacttttgggtga |
44348165 |
T |
|
| Q |
119 |
attttgagcaggtaacctttccattttttgtattgcatggagaaacagatacagtgacagacccagaagtaagcagggcattatatgagagagctagtag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44348164 |
attttgagcaggtaacctttccattttttgtattgcatggagaaacagatacagtgacagacccagaagtaagcagggcattatatgagagagctagtag |
44348065 |
T |
|
| Q |
219 |
caaagataagacaattaaattgtaccctggaatgtggcatggtttaacatctggtgagcctgatgacaacattgaaaaagtttttgaagacatcatcacg |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44348064 |
caaagataagacaattaaattgtaccctggaatgtggcatggtttaacatctggtgagcctgatgacaacattgaaaaagtttttgaagacatcatcaca |
44347965 |
T |
|
| Q |
319 |
tggcttgacaagcacgccaacaatgatg |
346 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
44347964 |
tggcttgacaagcacgccaacaatgatg |
44347937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 115 - 284
Target Start/End: Original strand, 39562493 - 39562662
Alignment:
| Q |
115 |
gtgaattttgagcaggtaacctttccattttttgtattgcatggagaaacagatacagtgacagacccagaagtaagcagggcattatatgagagagcta |
214 |
Q |
| |
|
||||||||||||||||| || || || || || || || |||||||| ||||| |||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
39562493 |
gtgaattttgagcaggtgacgttgcctttcttagtgttacatggagaggaagataaagtgacagacccggaagtaagcaaggcattatatgagagagcta |
39562592 |
T |
|
| Q |
215 |
gtagcaaagataagacaattaaattgtaccctggaatgtggcatggtttaacatctggtgagcctgatga |
284 |
Q |
| |
|
|||| ||| ||||| || |||||||||||||||||||||||||| |||||| |||| ||||||||||| |
|
|
| T |
39562593 |
gtagtgtagacaagaccataaaattgtaccctggaatgtggcatggcttaacagctggggagcctgatga |
39562662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 52216378 - 52216331
Alignment:
| Q |
217 |
agcaaagataagacaattaaattgtaccctggaatgtggcatggttta |
264 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
52216378 |
agcaaagataagacactgaaattgtaccctggaatgtggcatggttta |
52216331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University