View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2088_low_5 (Length: 297)
Name: NF2088_low_5
Description: NF2088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2088_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 14 - 279
Target Start/End: Complemental strand, 36149400 - 36149135
Alignment:
| Q |
14 |
gaacactctcctaatcaaggacaagaagtagcacacgtgaaggaagatgagactgatgcagagacaaaagaaaatgactctccaccaccattgcatgaag |
113 |
Q |
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| T |
36149400 |
gaacactctcctaatcaaggacaagaagtagcacacgtgaaggaagatgagactgatgcagagacaaaagaaaatgactctccaccaccattgcatgaag |
36149301 |
T |
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| Q |
114 |
ttgaagccattcttgaatacgaatttaagaacaaactattactagaagaggctttcactcatggtacttatggtgctgagaatggcttatcatatgaacg |
213 |
Q |
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| T |
36149300 |
ttgaagccattcttgaatacgaatttaagaacaaactattactagaagaggctttcactcatggtacttatggtgctgagaatggcttatcatatgaacg |
36149201 |
T |
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| Q |
214 |
tttggaatatgtaggtgattcagttcttaacctaatgataacaaaggaacagtttcaagcatatcc |
279 |
Q |
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| T |
36149200 |
tttggaatatgtaggtgattcagttcttaacctaatgataacaaaggaacagtttcaagcatatcc |
36149135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 105 - 279
Target Start/End: Complemental strand, 36083412 - 36083238
Alignment:
| Q |
105 |
tgcatgaagttgaagccattcttgaatacgaatttaagaacaaactattactagaagaggctttcactcatggtacttatggtgctgagaatggcttatc |
204 |
Q |
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| T |
36083412 |
tgcatgaagtggaagcaattctagaatacgaatttaagaacatactattgctagaagaggctttcactcactgtacttacggtgctgagaatggcttatc |
36083313 |
T |
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| Q |
205 |
atatgaacgtttggaatatgtaggtgattcagttcttaacctaatgataacaaaggaacagtttcaagcatatcc |
279 |
Q |
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| T |
36083312 |
ttatgagcgtttggaatacataggtgattcagttcttaacctaatgataacaacggaacaatttcatgcatatcc |
36083238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 36 - 174
Target Start/End: Original strand, 26527625 - 26527763
Alignment:
| Q |
36 |
aagaagtagcacacgtgaaggaagatgagactgatgcagagacaaaagaaaatgactctccaccaccattgcatgaagttgaagccattcttgaatacga |
135 |
Q |
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|||||| || |||| |||||||| |||||| |||||| |||||| |||||||||| |||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
26527625 |
aagaagaagaacacatgaaggaaaatgagaatgatgcggagacagaagaaaatgattctccaccaccaccgcatgaagtggaagccattcttgaatacga |
26527724 |
T |
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| Q |
136 |
atttaagaacaaactattactagaagaggctttcactca |
174 |
Q |
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| T |
26527725 |
attcaagaacaaactattactagaagaggctttcactca |
26527763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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