View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2089-Insertion-1 (Length: 1000)
Name: NF2089-Insertion-1
Description: NF2089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2089-Insertion-1 |
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| [»] scaffold0286 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 492; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 10 - 608
Target Start/End: Complemental strand, 6325192 - 6324593
Alignment:
| Q |
10 |
ttaaatgtacttttaaacattctcaattaagaaaatgctttttaaaaatgattgatttgcatggttttctttttactaagctgatataaaaaa-tgttac |
108 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6325192 |
ttaaatgtacttttaaacattctcaattaagaaaatgctttttaaaaatgattgatttgcatggttttctttttactaagctgatataaaaaaatgttac |
6325093 |
T |
|
| Q |
109 |
atgtaacattagagtaaacgattttgagtcagttaatttgattttcctcaaagaccaatattaaaagaatgattctactttaaatactagagctcgaaga |
208 |
Q |
| |
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|||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6325092 |
atgtaacactagagtaaacgattttgagtaagttaatttaattttcctcaaagaccaatattaaaagaatgattctactttaaatactagagctcgaaga |
6324993 |
T |
|
| Q |
209 |
ttatttttcgagtaataacattgaaatttgaaacaagtacgaccagattcacttgaaatttcaaacagtgtaacttttataaaattgtcatgccattgtg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6324992 |
ttatttttcgagtaataacattgaaatttgaaacaagtacgaccagattcacttgaaatttcaaacagtgtaacttttataaaattgtcatgccattgtg |
6324893 |
T |
|
| Q |
309 |
gatcaaagaagtctttctgacaacgactataagttattcggaaattaaaattcaaagtacaagaagaaacttctgaaaatacttcaaagctgataatatt |
408 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
6324892 |
gatcaaagaagtctttctgacaatgactataagttattcggaaattaaaattcaaagtacaagaagaaacttctaaaaatacttcaaagctgatattatt |
6324793 |
T |
|
| Q |
409 |
catgcattgtagaggctatannnnnnnnnnnnnnnnnataaattgtagcatgaaactcatgcaaaagagtttattttcgttgcatgaagacttgcattct |
508 |
Q |
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||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6324792 |
catgcattgtagaagctatatttttattttattttttataaattgtagcatgaaactcatgcaaaagagtttattttcgttgcatgaagacttgcattct |
6324693 |
T |
|
| Q |
509 |
ctcttnnnnnnntgaaaacttgcctattagtaacacaactgccgcaccaatagataaacatcttgacgatgtatctaattcatttcgattataagtgatg |
608 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6324692 |
ctcttaaaaaaatgaaaacttgcctattagtaacacaactgccgcaccaatagataaacatcttgacgatgtatctaattcatttcgattataagtgatg |
6324593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 680 - 997
Target Start/End: Complemental strand, 6324520 - 6324209
Alignment:
| Q |
680 |
gtcacgcatttcttgcgtcacaaacttaagaattcccaggtaattaagtattcccagttcaacccaattccacgcattttcttcttcacttaaaatggga |
779 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
6324520 |
gtcacgcatttcttgcgtcacaaacttaagaattcccaggtaattaagtattcccagttcaacccaattccacgcattttcttcttcacttaaaatgaga |
6324421 |
T |
|
| Q |
780 |
agtgtttagccatggattccagccttgatttgtattttccagccacatattttcatttcctaccccaagcatttttctcatcaactaatcaagcattttc |
879 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
6324420 |
agtgtttagccatggattccagccttgatttgtattttccagccacatattttcatttcctaccccaagcatttttctcatcaactaa--aagtattttc |
6324323 |
T |
|
| Q |
880 |
ctccgcatatatactctcatcctcttgtgttgagaataatggagtcaaagggagaaagatcataaatgtatgcaagatagagagcatatgtgtatttatg |
979 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6324322 |
ctccgcatatatactctcatcctcttgtgttgagaataatggagtcaaagggagaaagatcata----tatgcaagatagagagcatatgtgtatttatg |
6324227 |
T |
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| Q |
980 |
agaagaatactcattaaa |
997 |
Q |
| |
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|||||||||||||||||| |
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| T |
6324226 |
agaagaatactcattaaa |
6324209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 446 - 580
Target Start/End: Complemental strand, 6332838 - 6332698
Alignment:
| Q |
446 |
ataaattgtagcatgaaactcatgcaaaagagtttattttcgttgcatgaagacttgcattctctctt--nnnnnnntgaaaacttgcctattag-taac |
542 |
Q |
| |
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|||||||||| ||| |||||||||||||||| || ||||||||| |||||| |||||||||||||||| ||||||||||| |||||| |||| |
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| T |
6332838 |
ataaattgtaccatcaaactcatgcaaaagaattcattttcgtttcatgaaaacttgcattctctcttcaaaaaaaatgaaaacttgcatattagataac |
6332739 |
T |
|
| Q |
543 |
acaactgccg---caccaatagataaacatcttgacgatgt |
580 |
Q |
| |
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|||||||| | ||||||||||||||||||||| |||||| |
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| T |
6332738 |
acaactgctgcaccaccaatagataaacatcttgtcgatgt |
6332698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 209
Target Start/End: Complemental strand, 6330226 - 6330147
Alignment:
| Q |
130 |
ttttgagtcagttaatttgattttcctcaaagaccaatattaaaagaatgattctactttaaatactagagctcgaagat |
209 |
Q |
| |
|
||||||| |||||| || |||||||||||||| ||||||||||||| | || ||||| ||||||||||| |||||||| |
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| T |
6330226 |
ttttgagggagttaagtttattttcctcaaagattaatattaaaagaacggttttacttcaaatactagagatcgaagat |
6330147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 574 - 604
Target Start/End: Complemental strand, 6332689 - 6332659
Alignment:
| Q |
574 |
acgatgtatctaattcatttcgattataagt |
604 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
6332689 |
acgatgtatctaattcatttcgattataagt |
6332659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 935 - 993
Target Start/End: Complemental strand, 10954301 - 10954243
Alignment:
| Q |
935 |
aagatcataaatgtatgcaagatagagagcatatgtgtatttatgagaagaatactcat |
993 |
Q |
| |
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||||| ||| ||||| | || |||||||||||||||||||||||||||| |||| |||| |
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| T |
10954301 |
aagattatagatgtaagtaaaatagagagcatatgtgtatttatgagaataatattcat |
10954243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 907 - 991
Target Start/End: Complemental strand, 15315 - 15231
Alignment:
| Q |
907 |
tgttgagaataatggagtcaaagggagaaagatcataaatgtatgcaagatagagagcatatgtgtatttatgagaagaatactc |
991 |
Q |
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|||||| ||| ||||| ||| ||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
15315 |
tgttgaaaatcatggaatcatagggatgaagatcatagttgtaagcaagatagagagcatatgtgtatttatgagaagaatactc |
15231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 907 - 991
Target Start/End: Original strand, 2161791 - 2161875
Alignment:
| Q |
907 |
tgttgagaataatggagtcaaagggagaaagatcataaatgtatgcaagatagagagcatatgtgtatttatgagaagaatactc |
991 |
Q |
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|||||| ||| ||||| ||| ||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2161791 |
tgttgaaaatcatggaatcatagggatgaagatcatagttgtaagcaagatagagagcatatgtgtatttatgagaagaatactc |
2161875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 928 - 991
Target Start/End: Original strand, 3274451 - 3274514
Alignment:
| Q |
928 |
agggagaaagatcataaatgtatgcaagatagagagcatatgtgtatttatgagaagaatactc |
991 |
Q |
| |
|
||||||||| |||||| ||||| |||| |||||||||||||||||||| ||| ||||||||||| |
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|
| T |
3274451 |
agggagaaacatcatatatgtaagcaaaatagagagcatatgtgtattcatgtgaagaatactc |
3274514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 945 - 993
Target Start/End: Original strand, 20515970 - 20516018
Alignment:
| Q |
945 |
atgtatgcaagatagagagcatatgtgtatttatgagaagaatactcat |
993 |
Q |
| |
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||||| |||||||||||| |||||||||| | ||||||||||||||||| |
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| T |
20515970 |
atgtaagcaagatagagaacatatgtgtaatcatgagaagaatactcat |
20516018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 907 - 992
Target Start/End: Original strand, 3961093 - 3961178
Alignment:
| Q |
907 |
tgttgagaataatggagtcaaagggagaaagatcataaatgtatgcaagatagagagcatatgtgtatttatgagaagaatactca |
992 |
Q |
| |
|
|||||||||| ||||| || |||||||||| | ||| || || |||||| | ||| ||||||||||||||||| || |||||||| |
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| T |
3961093 |
tgttgagaatcatggaatcgaagggagaaaactgatagatctaagcaagacaaagaacatatgtgtatttatgataataatactca |
3961178 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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