View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2089-Insertion-10 (Length: 357)
Name: NF2089-Insertion-10
Description: NF2089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2089-Insertion-10 |
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Alignment Details
Target: chr5 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 8 - 128
Target Start/End: Original strand, 16400945 - 16401065
Alignment:
| Q |
8 |
aaaggtagtagctgaagtgctgacctaatgaaaggatcccgattacaagagttacagccgagtcaattaggacatcggctatcttatgaaatgataacag |
107 |
Q |
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| T |
16400945 |
aaaggtagtagctgaagtgctgaactaatgaaaggatcccgattacaagagttacagccgagtcaattaggacatcggctatcttatgaaatgataacag |
16401044 |
T |
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| Q |
108 |
aaatgtagtttaaagtccttg |
128 |
Q |
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| T |
16401045 |
atatgtagtttaaagtccttg |
16401065 |
T |
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Target: chr5; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 127 - 264
Target Start/End: Original strand, 16401119 - 16401257
Alignment:
| Q |
127 |
tgatgattttgaatttcgcatatccatgtttctataaatcatcatataaaattatnnnnnnnnttcgaagttataagtacaa-ctagttattcaactcca |
225 |
Q |
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||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
16401119 |
tgatgattttgaatttctcatatccatgtttctataactcatcatataaaattataaaaaaaattcgaagttataagtacaaactagttattcaactcca |
16401218 |
T |
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| Q |
226 |
tacaaacaagaactgattccaattcttcaacttacaaaa |
264 |
Q |
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| T |
16401219 |
tacaaacaagaactgattccaattcttcaacttacaaaa |
16401257 |
T |
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