View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2089-Insertion-12 (Length: 198)
Name: NF2089-Insertion-12
Description: NF2089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2089-Insertion-12 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 8 - 195
Target Start/End: Original strand, 8696302 - 8696489
Alignment:
| Q |
8 |
ccatttatggttgatttggaaaacttgttaaggcaacgaatgcataaatcagggtagagggtacccttgcaagatgactctatgtaggtcattgtatgag |
107 |
Q |
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| T |
8696302 |
ccatttatggttgatttggaaaacttgtttaggcaacgaatgcataaatcagggtagagggtaccattgcaagaggactctatgtagtttattgtttgag |
8696401 |
T |
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| Q |
108 |
agttatgtttggctagggtggatttaaagaggagtgagaggaaaatgactagtgatgttagaatgacttttggtgccatcttgggtta |
195 |
Q |
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| T |
8696402 |
agttatgtttggctagggtggatttaaagaggagtgagaggaaaatgactaatgatgctagaatgagttttggggccatcttgggtta |
8696489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 8692964 - 8692778
Alignment:
| Q |
8 |
ccatttatggttgatttggaaaacttgttaaggcaacgaatgcataaatcagggtagagggtacccttgcaagatgactctatgtaggtcattgtatgag |
107 |
Q |
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| T |
8692964 |
ccatttatgtttgatttggaaaacttgtttaggcaacgaatgcataaatcagggtagagtgtaccattgcaagaggactttatataggtcattgtatgag |
8692865 |
T |
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| Q |
108 |
agttatgtttggctagggtggatttaaagaggagtgagaggaaaatgactagtgatgttagaatgacttttggtgccatcttgggtt |
194 |
Q |
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| T |
8692864 |
agttatgtttggctagggtggattcaaaaaggagtgagaggaaaatgactagtgatgttagaatgagttttggtgccattttgggtt |
8692778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 8 - 195
Target Start/End: Original strand, 8687733 - 8687920
Alignment:
| Q |
8 |
ccatttatggttgatttggaaaacttgttaaggcaacgaatgcataaatcagggtagagggtacccttgcaagatgactctatgtaggtcattgtatgag |
107 |
Q |
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| T |
8687733 |
ccatttatggttgatttggaaaacttcttaaggcaacgaatgcacaaatcagggtagagggtaccattgcaagaggactctatgtaggtcattgtttgag |
8687832 |
T |
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| Q |
108 |
agttatgtttggctagggtggatttaaagaggagtgagaggaaaatgactagtgatgttagaatgacttttggtgccatcttgggtta |
195 |
Q |
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| T |
8687833 |
tgttatgtttggctaaggaagactctatgaagagtgagaggaaaatgattagtgatgtgagaatgaatttttgttccattttgtgtta |
8687920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 8 - 195
Target Start/End: Complemental strand, 8674733 - 8674546
Alignment:
| Q |
8 |
ccatttatggttgatttggaaaacttgttaaggcaacgaatgcataaatcagggtagagggtacccttgcaagatgactctatgtaggtcattgtatgag |
107 |
Q |
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| T |
8674733 |
ccatttatggttgaactggaaaatttgttaaggcaacgaatacatagagtagggtagagggtaccgttgcaagaggactcaatgtagtttattgtttgag |
8674634 |
T |
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| Q |
108 |
agttatgtttggctagggtggatttaaagaggagtgagaggaaaatgactagtgatgttagaatgacttttggtgccatcttgggtta |
195 |
Q |
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| T |
8674633 |
agttatgtttggctagggaggactctaagaaaagtgagaggaaaatgactagtgatgtgagaatgaatttttgtgccattttgtgtta |
8674546 |
T |
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