View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2089-Insertion-13 (Length: 93)

Name: NF2089-Insertion-13
Description: NF2089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2089-Insertion-13
NF2089-Insertion-13
[»] chr8 (2 HSPs)
chr8 (8-93)||(28883668-28883753)
chr8 (11-66)||(30525226-30525281)
[»] chr5 (2 HSPs)
chr5 (40-86)||(8402167-8402213)
chr5 (40-87)||(8402038-8402085)
[»] chr1 (2 HSPs)
chr1 (10-76)||(10645787-10645853)
chr1 (8-64)||(3142945-3143001)
[»] chr4 (5 HSPs)
chr4 (41-87)||(9928793-9928839)
chr4 (38-67)||(53089811-53089840)
chr4 (38-66)||(11785036-11785064)
chr4 (20-87)||(18523228-18523295)
chr4 (39-66)||(36165714-36165741)
[»] chr2 (1 HSPs)
chr2 (20-66)||(43829621-43829667)
[»] chr7 (1 HSPs)
chr7 (38-87)||(35035254-35035303)


Alignment Details
Target: chr8 (Bit Score: 82; Significance: 3e-39; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 3e-39
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 28883668 - 28883753
Alignment:
Q  8 tggatctcatctcaaaagctacctcggagaatgagggtactcaaacatatttatacacttgacaacccgaaaacctgagctgggac 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  28883668 tggatctcatctcaaaagctacctcggagaatgagggtactcaaacatatttatacacttaacaacccgaaaacctgagctgggac 28883753  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 30525281 - 30525226
Alignment:
Q  11 atctcatctcaaaagctacctcggagaatgagggtactcaaacatatttatacact 66  Q
    |||||||| ||||||||| |||  |||||||| |||||||||||||||||||||||    
T  30525281 atctcatcccaaaagctagctcaaagaatgagagtactcaaacatatttatacact 30525226  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 8402167 - 8402213
Alignment:
Q  40 gagggtactcaaacatatttatacacttgacaacccgaaaacctgag 86  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||    
T  8402167 gagggtactcaaacatatttatacactcgacagcccgaaaacctgag 8402213  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 8402038 - 8402085
Alignment:
Q  40 gagggtactcaaacatatttatacacttgacaacccgaaaacctgagc 87  Q
    |||||||||||| |||||||||||||| |||| ||||| |||||||||    
T  8402038 gagggtactcaagcatatttatacactcgacagcccgagaacctgagc 8402085  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 10645853 - 10645787
Alignment:
Q  10 gatctcatctcaaaagctacctcggagaatgagggtactcaaacatatttatacacttgacaacccg 76  Q
    |||||||||| ||||| || |||  || |||||||||||||||||||||||||||||  ||||||||    
T  10645853 gatctcatcttaaaagatagctctaaggatgagggtactcaaacatatttatacactcaacaacccg 10645787  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 3143001 - 3142945
Alignment:
Q  8 tggatctcatctcaaaagctacctcggagaatgagggtactcaaacatatttataca 64  Q
    ||||| ||||| ||||||||| |||| ||||||| ||||||| | ||||||||||||    
T  3143001 tggatgtcatcccaaaagctaactcgaagaatgaaggtactcgagcatatttataca 3142945  T

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Target: chr4 (Bit Score: 31; Significance: 0.000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 9928793 - 9928839
Alignment:
Q  41 agggtactcaaacatatttatacacttgacaacccgaaaacctgagc 87  Q
    ||||||||||||||||||||||||||  |||||||| ||| ||||||    
T  9928793 agggtactcaaacatatttatacactcaacaacccggaaatctgagc 9928839  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 67
Target Start/End: Original strand, 53089811 - 53089840
Alignment:
Q  38 atgagggtactcaaacatatttatacactt 67  Q
    ||||||||||||||||||||||||||||||    
T  53089811 atgagggtactcaaacatatttatacactt 53089840  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 66
Target Start/End: Complemental strand, 11785064 - 11785036
Alignment:
Q  38 atgagggtactcaaacatatttatacact 66  Q
    |||||||||||||||||||||||||||||    
T  11785064 atgagggtactcaaacatatttatacact 11785036  T

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Target: chr4; HSP #4
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 18523228 - 18523295
Alignment:
Q  20 caaaagctacctcggagaatgagggtactcaaacatatttatacacttgacaacccgaaaacctgagc 87  Q
    |||||| ||||||  || |||||||||||||||||||||||||   |  |||||||| ||||||||||    
T  18523228 caaaagatacctcaaaggatgagggtactcaaacatatttatatgttcaacaacccggaaacctgagc 18523295  T

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Target: chr4; HSP #5
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 66
Target Start/End: Original strand, 36165714 - 36165741
Alignment:
Q  39 tgagggtactcaaacatatttatacact 66  Q
    ||||||||||||||||||||||||||||    
T  36165714 tgagggtactcaaacatatttatacact 36165741  T

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Target: chr2 (Bit Score: 31; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 43829621 - 43829667
Alignment:
Q  20 caaaagctacctcggagaatgagggtactcaaacatatttatacact 66  Q
    ||||||||| |||  ||||||||| ||||||||||||||||||||||    
T  43829621 caaaagctagctcaaagaatgaggatactcaaacatatttatacact 43829667  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 35035254 - 35035303
Alignment:
Q  38 atgagggtactcaaacatatttatacacttgacaacccgaaaacctgagc 87  Q
    |||||| ||||||||||||||||||||||  |||| | ||||||||||||    
T  35035254 atgaggctactcaaacatatttatacactcaacaaactgaaaacctgagc 35035303  T

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