View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2089-Insertion-2 (Length: 891)
Name: NF2089-Insertion-2
Description: NF2089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2089-Insertion-2 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 774; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 774; E-Value: 0
Query Start/End: Original strand, 78 - 891
Target Start/End: Complemental strand, 44720613 - 44719800
Alignment:
| Q |
78 |
acaatggaagaggcagaaccataggcataagcacatattttccctgccatatgcagtaagtaacttaatttcgtctacagttaacttttcaagataatat |
177 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44720613 |
acaatggaagaggcagaaccataggcataagcacatattttccctgccatatgcagtaagtaacttaatttcgtctacagttaacttttcaagataatat |
44720514 |
T |
|
| Q |
178 |
ttcccgtcacattaaaaactcaagtgctgccatactcgataaacctaggtttgttatatgacttacaaatttgtataggatgtaactccatgcttagaat |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44720513 |
ttcccgtcacattaaaaactcaagtgctgccatactcgataaacctaggtttgttatatgacttacaaatttgtataggatgtaactccatgcttagaat |
44720414 |
T |
|
| Q |
278 |
aatgataaattagatctaccatttcaaataagatgattgttctattttagtaaccgcttacttacttttggcttcttcttggtagctgatattagtttga |
377 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44720413 |
aatgataaattagacctaccatttcaaataagatgattgttctattttagtaaccgcttacttacttttggcttcttcttggtagttgatattagtttga |
44720314 |
T |
|
| Q |
378 |
aacaaagaagataaaagtaaatactgttagctacttgaacatatctgtttcatccattcttttatttttatgacagttaattacaacatgggaaagcatc |
477 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44720313 |
aacaaagaagataaaagtaaatactgttagctacttgaacatatctgtttcatccattcttttatttttatgacagttaattacaacatgggaaagcatc |
44720214 |
T |
|
| Q |
478 |
tcactatgtgaacgcttaaccatgtcagccttctgcaggtaacattgctgcttttaatgctttaaatgaaaattcagatatcaactttataatgtatgtt |
577 |
Q |
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| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44720213 |
tgactatgtgaacgtttaaccatgtcagccttctgtaggtaacattgctgcttttaatgctttaaatgaaaattcagatatcaactttataatgtatgtt |
44720114 |
T |
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| Q |
578 |
catacgaaaaaatacaaataacttcagattaaaccaaacatctggttggtctgagtgctaagaggcttggccatcttaaacaaatagctaattgaatatg |
677 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44720113 |
catacgaaaaaatacaaataacttcagattaaaccaaacatctggttggtctgagttctaagaggcttggccatcttaaacaaatagctgattgaatatg |
44720014 |
T |
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| Q |
678 |
gaccgctgaataatgaaactcttcaccagatcttctatttgttattttcttttgcaacattagttgattataattaagtaatcacgtttcttctaatgca |
777 |
Q |
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| T |
44720013 |
gaccgctgaataatgaaactcttcaccagatcttctatttgttattttcttttgcaacattagttgattataattaagtaatcacctttcttctaatgca |
44719914 |
T |
|
| Q |
778 |
gactacctacgaagttttgggctgaaaatggactgttgtcaaatgccaagttaatctaaataaaattgattttggcactacaactttgcattacattgtc |
877 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44719913 |
gactacctacgaagttttgggctgaaaatggaccgttgtcaaatgccaagttaatctaaataaaattgattttggcactacaactttgcattacattgtc |
44719814 |
T |
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| Q |
878 |
ctaatatgctccga |
891 |
Q |
| |
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||||||||||||| |
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| T |
44719813 |
ttaatatgctccga |
44719800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 278 - 567
Target Start/End: Original strand, 43169572 - 43169874
Alignment:
| Q |
278 |
aatgataaattagatctaccatttcaaataagatgattgttctattttagtaaccgcttacttacttttggcttcttcttggtagctgatattagtttga |
377 |
Q |
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|||||||||||||| || |||||||||| | |||||||||||| |||||| || | ||| ||||| ||||||| |||||||||||||||||||||| |
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| T |
43169572 |
aatgataaattagacctgccatttcaaaaaggatgattgttctggtttagt----gcctgctttctttttgcttcttattggtagctgatattagtttga |
43169667 |
T |
|
| Q |
378 |
aacaaagaagataaaagtaaatactgttagctacttgaacatatctgtttcatccattcttttatttttatgacagtta-------------attacaac |
464 |
Q |
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|| |||||||||||||||||| || || |||| | || |||||||||||| ||||||||||||||||||||||||| ||| |||| |
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| T |
43169668 |
aa--aagaagataaaagtaaattttg--agatactcgcacgtatctgtttcattcattcttttatttttatgacagttataatatgggtgtgatttcaac |
43169763 |
T |
|
| Q |
465 |
atgggaaagcatctcactatgtgaacgcttaaccatgtcagccttctgcaggtaa--------cattgctgcttttaatgctttaaatgaaaattcagat |
556 |
Q |
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|| |||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| || | |
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| T |
43169764 |
caggcaaagcatcacactatgtgaacgcttaaccgtgtcagccttctgcaggtaaaattaacgcattgctgtttttaatgctttaaatgaaaatttagtt |
43169863 |
T |
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| Q |
557 |
atcaactttat |
567 |
Q |
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||||||||||| |
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| T |
43169864 |
atcaactttat |
43169874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 44721410 - 44721338
Alignment:
| Q |
7 |
atgaataacttattttttcaagagaggcagatgatgctttggtgcaggcttatgataccaaagtcagaatcac |
79 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44721410 |
atgaataacttattttttcaagagagccagatgatgctttggtgcaggcttatgataccaaagtcagaatcac |
44721338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 722 - 819
Target Start/End: Original strand, 43170511 - 43170607
Alignment:
| Q |
722 |
ttttcttttgcaacattagttgattataattaagtaatcacgtttcttctaatgcagactacctacgaagttttgggctgaaaatggactgttgtcaa |
819 |
Q |
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| T |
43170511 |
ttttcttttgcggcgttagttgattataattaagtaattacctttcttctaatg-tgacggccaactaagttttgggctagaaatggactgttgtcaa |
43170607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 568 - 664
Target Start/End: Original strand, 43169890 - 43169990
Alignment:
| Q |
568 |
aatgtatgttcatacgaaaaaataca-aataacttcagattaaaccaaacatctggttggt----ctgagtgctaagaggcttggccatcttaaacaaat |
662 |
Q |
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||||||| |||||| ||||||||| |||||||||||||| ||||| ||| |||||||| ||||||||| |||||||||| |||||||||||||| |
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| T |
43169890 |
aatgtattttcatatgaaaaaataaggaataacttcagattttaccaa-catgtggttggtatgtctgagtgctgagaggcttggtcatcttaaacaaat |
43169988 |
T |
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| Q |
663 |
ag |
664 |
Q |
| |
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|| |
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| T |
43169989 |
ag |
43169990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 221
Target Start/End: Complemental strand, 38672782 - 38672672
Alignment:
| Q |
107 |
agcacatattttccctgccatatgcagtaagtaacttaatttcgtctacagttaacttttcaagataatatttcccgtcacattaaaaactcaagtgctg |
206 |
Q |
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||||||| ||||||||| |||||||||||||| |||||||||||| |||| |||| |||||||| ||||| || |||||||||||| ||||| | |
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| T |
38672782 |
agcacatcttttccctgttatatgcagtaagtac----atttcgtctacaattaaattttgaagataatctttcctgtaacattaaaaacttaagtgtcg |
38672687 |
T |
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| Q |
207 |
ccatactcgataaac |
221 |
Q |
| |
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|||||||||||||| |
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| T |
38672686 |
tcatactcgataaac |
38672672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 38672891 - 38672836
Alignment:
| Q |
44 |
tttggtgcaggcttatgataccaaagtcagaatcacaatggaagaggcagaaccat |
99 |
Q |
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| T |
38672891 |
tttggtgcaggctgatgatatcaaattcagaatggcaatggaagaggcagaaccat |
38672836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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