View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2089-Insertion-3 (Length: 858)

Name: NF2089-Insertion-3
Description: NF2089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2089-Insertion-3
NF2089-Insertion-3
[»] chr5 (10 HSPs)
chr5 (29-858)||(37316059-37316890)
chr5 (52-208)||(37239796-37239952)
chr5 (575-762)||(37240426-37240614)
chr5 (274-398)||(37240084-37240208)
chr5 (64-132)||(37198879-37198947)
chr5 (86-132)||(37384869-37384915)
chr5 (86-132)||(37218297-37218343)
chr5 (86-132)||(37224013-37224059)
chr5 (231-260)||(5360238-5360267)
chr5 (312-373)||(37199169-37199230)
[»] chr3 (2 HSPs)
chr3 (56-129)||(36200765-36200838)
chr3 (231-261)||(48191713-48191743)
[»] chr2 (1 HSPs)
chr2 (52-131)||(8732683-8732762)
[»] chr8 (1 HSPs)
chr8 (231-261)||(24471289-24471319)
[»] chr6 (1 HSPs)
chr6 (231-260)||(6894812-6894841)


Alignment Details
Target: chr5 (Bit Score: 669; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 669; E-Value: 0
Query Start/End: Original strand, 29 - 858
Target Start/End: Original strand, 37316059 - 37316890
Alignment:
Q  29 ttattaattagctgatttatatccagatatgctcaatatggtgatgtttctccaaaaatagatgtatatgcttttggagttgttctttttgaacttattt 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37316059 ttattaattagctgatttatatccagatatgctcaatatggtgatgtttctccaaaaatagatgtttatgcttttggagttgttctttttgaacttattt 37316158  T
Q  129 ctgcaaagaatgctgttctcaagacaggtgaattcgttgctgaatcaaggggtcttgtagtcttggtaggtttagatacccctttgtctaactgaacaat 228  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37316159 ctgcaaagaatgctgttctgaagacaggtgaattcgttgctgaatcaaggggtcttgtagccttggtaggtttagatacccctttgtctaactgaacaat 37316258  T
Q  229 ttatcctccggtcactattataaacaaaaattacctttgatatctttttctattgcagtttgaagaagcacttaatcagactgatcctttagaaagtctt 328  Q
        |||||| ||||| |||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37316259 acgccctccgatcactgttataaacaaaagttacctttgatttctttttgtattgcagtttgaagaagcacttaatcagactgatcctttagaaagtctt 37316358  T
Q  329 cacaaactggtggatcctagacttagagaagactatccaattgattctgttctaaaggtgggaagcatttccattatcaannnnnnnnnnctcttttcaa 428  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||    
T  37316359 cgcaaactggtggatcctagacttagagaagactatccaattgattctgttctaaaggtgggaagcatttccattatcaattttttttt-ctcttttcaa 37316457  T
Q  429 tttgtgttatatacnnnnnnncaaaacttgtttatgtggtatagcttttcatatcaaatatatatgtaaaagctattaataaaatgagagtatagtttac 528  Q
    ||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||    
T  37316458 tttgtgttatatacaaaaaaacaaaacttgtttatgtggtatagcttttcatatcaaatatat--gtaaaagctattaataaaatgagagtatagtt-ac 37316554  T
Q  529 taaactaattttgttttgcattagctagattttgtaattggacataataacttaagatggtgaatgtttgaattgtagatggcacaacttggaagagaat 628  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37316555 taaactaaatttgttttgcattagctagattttgtaattggacataataacttaagatggtgaatgtttgaattgtagatggcacaacttggaagagaat 37316654  T
Q  629 gtacaaaagacaatccactactacgtccaagtatgagatctatagttgtttctcttatgtcactcttatcacctagtgaagattgtgatggtgacacttc 728  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37316655 gtacaaaagacaatccactactacgtccaagtatgagatctatagttgtttctcttatgtcactcttatcacctagtgaagattgtgatggtgacacttc 37316754  T
Q  729 cgatgaaaatcaaactatcataaatctcttgtcagtgagatgaacgttctcattgcctaattgagtaatgttacttaacttttagaagcatacaa----- 823  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||         
T  37316755 cgatgaaaatcaaactatcataaatctcttgtcagtgagatgaaggttctcattgcctaattgagtaatgtttcttaacttttagaagcatacaatacaa 37316854  T
Q  824 caaaag-tttgtactttgtacataaatcatctattg 858  Q
    |||||| |||||||||||||||||||||||||||||    
T  37316855 caaaaggtttgtactttgtacataaatcatctattg 37316890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 52 - 208
Target Start/End: Original strand, 37239796 - 37239952
Alignment:
Q  52 cagatatgctcaatatggtgatgtttctccaaaaatagatgtatatgcttttggagttgttctttttgaacttatttctgcaaagaatgctgttctcaag 151  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||| || |||    
T  37239796 cagatatgctcaatatggcgatgtttctccaaaaatagatgtatatgcttttggcgttgttctttatgaacttattactgcaaagaatgctgtcctgaag 37239895  T
Q  152 acaggtgaattcgttgctgaatcaaggggtcttgtagtcttggtaggtttagatacc 208  Q
    ||||||||||  ||||| ||||||| ||||||||||   ||||||||| ||||||||    
T  37239896 acaggtgaatctgttgcagaatcaaagggtcttgtacaattggtaggtctagatacc 37239952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 575 - 762
Target Start/End: Original strand, 37240426 - 37240614
Alignment:
Q  575 ataacttaagatg-gtgaatgtttgaattgtagatggcacaacttggaagagaatgtacaaaagacaatccactactacgtccaagtatgagatctatag 673  Q
    ||||||||||||  |||||| ||||||||| ||||||| |||||||| |||| |||||| | ||||||||| |||||||| ||||| |||||||||||||    
T  37240426 ataacttaagatatgtgaatatttgaattgcagatggctcaacttgggagagcatgtacgagagacaatccgctactacgcccaagcatgagatctatag 37240525  T
Q  674 ttgtttctcttatgtcactcttatcacctagtgaagattgtgatggtgacacttccgatgaaaatcaaactatcataaatctcttgtca 762  Q
    ||||| |||||||| |||| | |||||| | |||||||||||||| |||| ||||  ||||||||||| || |||||||||| ||||||    
T  37240526 ttgttgctcttatgacactttcatcaccaactgaagattgtgatgatgactcttcatatgaaaatcaatctctcataaatctgttgtca 37240614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 274 - 398
Target Start/End: Original strand, 37240084 - 37240208
Alignment:
Q  274 ttttctattgcagtttgaagaagcacttaatcagactgatcctttagaaagtcttcacaaactggtggatcctagacttagagaagactatccaattgat 373  Q
    |||| ||||||||||||||||||||||| |||  |  |||||||||||| ||||||  ||| ||||||||||||| |||| |||| ||||||| ||||||    
T  37240084 ttttgtattgcagtttgaagaagcacttcatcgaatggatcctttagaaggtcttcgaaaattggtggatcctaggcttaaagaaaactatcccattgat 37240183  T
Q  374 tctgttctaaaggtgggaagcattt 398  Q
    |||||||| ||||||||||||||||    
T  37240184 tctgttctcaaggtgggaagcattt 37240208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 37198879 - 37198947
Alignment:
Q  64 atatggtgatgtttctccaaaaatagatgtatatgcttttggagttgttctttttgaacttatttctgc 132  Q
    |||||||  ||||||| |||||||||||||||||||||||||||| ||||||| |||||| ||||||||    
T  37198879 atatggtagtgtttcttcaaaaatagatgtatatgcttttggagtagttctttatgaactaatttctgc 37198947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 132
Target Start/End: Complemental strand, 37384915 - 37384869
Alignment:
Q  86 atagatgtatatgcttttggagttgttctttttgaacttatttctgc 132  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||    
T  37384915 atagatgtatatgcttttggagttgttctttatgaactaatttctgc 37384869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 132
Target Start/End: Original strand, 37218297 - 37218343
Alignment:
Q  86 atagatgtatatgcttttggagttgttctttttgaacttatttctgc 132  Q
    |||||||| || ||||||||||||||||||| |||||| ||||||||    
T  37218297 atagatgtgtacgcttttggagttgttctttatgaactaatttctgc 37218343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 132
Target Start/End: Original strand, 37224013 - 37224059
Alignment:
Q  86 atagatgtatatgcttttggagttgttctttttgaacttatttctgc 132  Q
    |||||||| || ||||||||||||||||||| |||||| ||||||||    
T  37224013 atagatgtgtacgcttttggagttgttctttatgaactaatttctgc 37224059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 231 - 260
Target Start/End: Complemental strand, 5360267 - 5360238
Alignment:
Q  231 atcctccggtcactattataaacaaaaatt 260  Q
    ||||||||||||||||||||||||||||||    
T  5360267 atcctccggtcactattataaacaaaaatt 5360238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 373
Target Start/End: Original strand, 37199169 - 37199230
Alignment:
Q  312 atcctttagaaagtcttcacaaactggtggatcctagacttagagaagactatccaattgat 373  Q
    ||||| ||||| ||||| | ||||||||||||||||| ||| ||||  ||||||||||||||    
T  37199169 atcctatagaaggtcttaaaaaactggtggatcctaggcttggagataactatccaattgat 37199230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 9e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 56 - 129
Target Start/End: Original strand, 36200765 - 36200838
Alignment:
Q  56 tatgctcaatatggtgatgtttctccaaaaatagatgtatatgcttttggagttgttctttttgaacttatttc 129  Q
    |||||||||||||| || |||||||| ||| ||||||| ||||| |||||||||||||||| ||||||||||||    
T  36200765 tatgctcaatatggagacgtttctcccaaagtagatgtttatgcctttggagttgttctttatgaacttatttc 36200838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 231 - 261
Target Start/End: Original strand, 48191713 - 48191743
Alignment:
Q  231 atcctccggtcactattataaacaaaaatta 261  Q
    |||||||||||||||||||||||||||||||    
T  48191713 atcctccggtcactattataaacaaaaatta 48191743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 131
Target Start/End: Complemental strand, 8732762 - 8732683
Alignment:
Q  52 cagatatgctcaatatggtgatgtttctccaaaaatagatgtatatgcttttggagttgttctttttgaacttatttctg 131  Q
    |||||| || || |||||||| |||||||| ||||||||||||||||| |||||||||||||| ||||| ||||| ||||    
T  8732762 cagatacgcacagtatggtgaagtttctcccaaaatagatgtatatgcatttggagttgttctgtttgagcttatatctg 8732683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 231 - 261
Target Start/End: Complemental strand, 24471319 - 24471289
Alignment:
Q  231 atcctccggtcactattataaacaaaaatta 261  Q
    |||||||||||||||||||||||||||||||    
T  24471319 atcctccggtcactattataaacaaaaatta 24471289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 231 - 260
Target Start/End: Original strand, 6894812 - 6894841
Alignment:
Q  231 atcctccggtcactattataaacaaaaatt 260  Q
    ||||||||||||||||||||||||||||||    
T  6894812 atcctccggtcactattataaacaaaaatt 6894841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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