View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2089-Insertion-4 (Length: 824)
Name: NF2089-Insertion-4
Description: NF2089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2089-Insertion-4 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 2e-94; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 95 - 307
Target Start/End: Original strand, 47190589 - 47190801
Alignment:
| Q |
95 |
tgtaacctgttgcgaaagttgatattgacaaagctctgggcaagcgagctgctgtggagttggtgcaatagctggcttttgatcaagttgtgctctacca |
194 |
Q |
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| T |
47190589 |
tgtaatctgttacgaaagttgatattgacaaagctctaggcaagcgagctgctgtggagttggtgcaatagctggcttttgatcaagttgtgctctacca |
47190688 |
T |
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| Q |
195 |
ggattcnnnnnnngtagtagatgctttcaattcagatgtgcaagatagatgacacatcttagctaattgtagagcaattttacctaattcttgcaatagc |
294 |
Q |
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| T |
47190689 |
ggattcaaaaaaagtagtagatgctttcaactcagatgtgcaagatagatgacacatcttagctaattgtagagcaattttacctaattcttgcaatagc |
47190788 |
T |
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| Q |
295 |
tcttatgcagagt |
307 |
Q |
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| T |
47190789 |
tcttatgcagagt |
47190801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 496 - 689
Target Start/End: Original strand, 47191172 - 47191365
Alignment:
| Q |
496 |
gattagatattgtaagagtcattgtgatataacattgatgttatttgatatttaattttatgttttgaatatctaattaagactttttagtaatatacat |
595 |
Q |
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| T |
47191172 |
gattagatattgtaagagtcattgtgatataacattaatgttatttgatatttaattttatgttttgaatatctaattaagactttttagtaatatacat |
47191271 |
T |
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| Q |
596 |
gaacatgagtnnnnnnntgaaattcggtctaacattattaaattttttaaacatagatggactgactgattcaatattaaaaatgattaattga |
689 |
Q |
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| T |
47191272 |
gaacatgagtaaaaaaatgaaattcggtctaacattattaaattttttaaacatagatggactgactgattcaatattaaaaatgattaattga |
47191365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 674 - 823
Target Start/End: Original strand, 47191500 - 47191654
Alignment:
| Q |
674 |
aaaaatgattaattgatgctagaaaaaagagaaaatatcaagttgaaattttaaatt-aaattataggaagtttttccagcaaagatattacaaa----t |
768 |
Q |
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| T |
47191500 |
aaaaatgattaattgatgctagaaaaaagataaaatatcaagttgaaattttaaattaaaattataggaactttttccagcaaagatattacaaatattt |
47191599 |
T |
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| Q |
769 |
atttatatctattattggtgcaaagttgaaatcaaactaaactaaactacaaaac |
823 |
Q |
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| T |
47191600 |
atttatatctattattggtgcaaagttgaaatcaaactaaactaaactacaaaac |
47191654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 342 - 456
Target Start/End: Original strand, 47190819 - 47190933
Alignment:
| Q |
342 |
aagagagaggctaatatggattttcatgattttactaaagaggttatatacaatgttagttttcaaattgattttgacatactagattatatcaatccgt |
441 |
Q |
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| T |
47190819 |
aagagagaggctaatatggttgttcatgattttactaaggcggtcatatacaatgttagtttttaaattgattttgacatactagattatatcaatccgt |
47190918 |
T |
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| Q |
442 |
tgatctttaatgaaa |
456 |
Q |
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| T |
47190919 |
tgatctttaatgaaa |
47190933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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