View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2089-Insertion-6 (Length: 741)
Name: NF2089-Insertion-6
Description: NF2089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2089-Insertion-6 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-138; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 328 - 736
Target Start/End: Complemental strand, 19176174 - 19175775
Alignment:
| Q |
328 |
gtcaaatcattaagtaccaatgtgaatctcaatgaacaaaataaaattactaaaacagtaatcaactatagaagaaaatttacaagatttaaccatagaa |
427 |
Q |
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| T |
19176174 |
gtcaaatcattaagtaccaatgtgaatctcaatgaacaaaataaaattactaaaacagtaatcaactatagaagaaaatttacaagatttaaccatagaa |
19176075 |
T |
|
| Q |
428 |
agcnnnnnnnnnnngacttaacaatagttgttccaataaaagttcgaactcagttactccaatcaattcgactttcagtgaaactcattaaccatttgag |
527 |
Q |
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||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19176074 |
agctttttttttttgtcttaacaatagttgttccaataaaagttcaaactcagttactccaatcaattcgactttcagtgaaactcattaaccatttgag |
19175975 |
T |
|
| Q |
528 |
cttaacaacttgattcaaaaataattactaccaatgacttatgacacaagatacgaatgattgnnnnnnnnnnnnnnnnnntttgctctatagtggagga |
627 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
19175974 |
cttaacagcttgattcaaaaataattactaccaatgacttatgacacaagatacgaatgattgaaaatttaaaatttaaaatttgctctatagtggagga |
19175875 |
T |
|
| Q |
628 |
tgtggccggtgtctgacaccgacacgacatcaacacatgtcattgaattcaattacgtgtatggtgtcagtgcttcataaaatttggcaacaagtaaaag |
727 |
Q |
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| T |
19175874 |
tgtggccggtgtccgacaccgacacgacatcaacgcgtgtcagtg---------gcgtgtctggtgtcagtacttcataaaatttggcaacaagtaaaag |
19175784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 157 - 301
Target Start/End: Complemental strand, 19176340 - 19176195
Alignment:
| Q |
157 |
aaagctctcagaactttgaaatttcaaagcaaaacctagttgtgcattataacatttgcaagtaatatacataacagtgtcaattgtccaaactctnnnn |
256 |
Q |
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| T |
19176340 |
aaagctctcagagctttggaatttcaaagcaaaacctaattgtgcattataacatttgcaagtaatatacataacagtgtcaattgtccaaactctaaaa |
19176241 |
T |
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| Q |
257 |
nnnnnnnntcatcatgcaatccaat-aatgtatccatagataatac |
301 |
Q |
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| T |
19176240 |
agaaaaaatcatcatgcaatccaataaatgtatccatagataatac |
19176195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 19176479 - 19176411
Alignment:
| Q |
8 |
ccctcttctgtcatatgataatttcatggattccgttgaaactccaaaaacagttgcactacatatgtg |
76 |
Q |
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| T |
19176479 |
ccctcttctgtcatatgatagtttcatggattccgttgaaactccaaaaacagttgcactacatatgtg |
19176411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 27035375 - 27035307
Alignment:
| Q |
8 |
ccctcttctgtcatatgataatttcatggattccgttgaaactccaaaaacagttgcactacatatgtg |
76 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||| |
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| T |
27035375 |
ccctcttctgtcatatgataatttcatggattctgttgaaactccaaaaacagtcgcactacatgtgtg |
27035307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 27035229 - 27035173
Alignment:
| Q |
196 |
ttgtgcattataacatttgcaagtaatatacataacagtgtcaattgtccaaactct |
252 |
Q |
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| T |
27035229 |
ttgtgcattattacatttgcaagtaatatacataacagtatcaattgtccaaactct |
27035173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 328 - 413
Target Start/End: Complemental strand, 27035103 - 27035015
Alignment:
| Q |
328 |
gtcaaatcattaagtaccaatgtgaatctcaatgaacaaa---ataaaattactaaaacagtaatcaactatagaagaaaatttacaag |
413 |
Q |
| |
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|||||||| ||||||||||||| |||||||||||||||| | ||||| ||||||||||| | |||| ||||||||||| ||||| |
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| T |
27035103 |
gtcaaatccataagtaccaatgtaaatctcaatgaacaaaaggaataaattgctaaaacagtacttaactcaagaagaaaattcacaag |
27035015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 36406442 - 36406389
Alignment:
| Q |
18 |
tcatatgataatttcatggattccgttgaaactccaaaaacagttgcactacat |
71 |
Q |
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| T |
36406442 |
tcataagataactgcatggattctgttgaaactccaaaaacagttgcactacat |
36406389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 682
Target Start/End: Complemental strand, 34611320 - 34611275
Alignment:
| Q |
637 |
tgtctgacaccgacacgacatcaacacatgtcattgaattcaatta |
682 |
Q |
| |
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|||||||||| ||||| |||||||||||||||||| ||||||||| |
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| T |
34611320 |
tgtctgacacagacaccacatcaacacatgtcattacattcaatta |
34611275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 636 - 665
Target Start/End: Original strand, 16192734 - 16192763
Alignment:
| Q |
636 |
gtgtctgacaccgacacgacatcaacacat |
665 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
16192734 |
gtgtctgacaccgacacgacatcaacacat |
16192763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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