View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2089-Insertion-9 (Length: 520)
Name: NF2089-Insertion-9
Description: NF2089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2089-Insertion-9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 8 - 513
Target Start/End: Complemental strand, 3163082 - 3162577
Alignment:
| Q |
8 |
tagcaaacatatctaacaaaaaatggccaccactaatatgacaacgaacatggagagacatctttcccttcaccttcttccactgcgccacaacttcatc |
107 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3163082 |
tagcaaatatatctaacaaaaaatggccaccactaatatgacaatgaacatggagagacatctttcccttcaccttcttccactgcgccacaacttcatc |
3162983 |
T |
|
| Q |
108 |
cctttgcaatctattataccatccctgcaactgcaattgaattcccatgtttgtatacttttttattcctaaaattcaatattcattattttcttgtgtg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3162982 |
cctttgcaatctattataccatccctgcaactgcaattgaattcccatgtttgtatacttttttattcctaaaattcaatattcattattttcttgtgtg |
3162883 |
T |
|
| Q |
208 |
tgtgaacctcttcaactctgttttgtgacttccatcaaatgattagggaagacatgactgtgatgatgatgttgataatcaaaattatgagaaatacctg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3162882 |
tgtgaacctcttcaactctgttttgtgacttccatcaaatgattagggaagacatgactgtgatgatgatgttgataatcaaaattatgagaaatacctg |
3162783 |
T |
|
| Q |
308 |
agagttattaatggtttgagaaattgccaaagtgagttttgaggttacatcactatgtgttaacgtataagtccttggaagatttcctggatgtttgtct |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3162782 |
agagttattaatggtttgagaaattgccaaagtgagttttgaggttacatcactatgtgttaacgtataagtccttggaagatttcctggatgtttgtct |
3162683 |
T |
|
| Q |
408 |
tcatcaattcctaagaacaaaaccttcaattttgatgcttcaaatatagccggtccaaataacctagcaacctgttccaaaatccaaaccaaaccaaacc |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3162682 |
tcatcaattcctaagaacaaaaccttcaattttgatgcttcaaatatagccggtccaaataacctagcaacctgttccaaaatccaaaccaaaccaaacc |
3162583 |
T |
|
| Q |
508 |
aacaaa |
513 |
Q |
| |
|
||||| |
|
|
| T |
3162582 |
cacaaa |
3162577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 411 - 474
Target Start/End: Complemental strand, 24993482 - 24993419
Alignment:
| Q |
411 |
tcaattcctaagaacaaaaccttcaattttgatgcttcaaatatagccggtccaaataacctag |
474 |
Q |
| |
|
|||||||||||||||||| || |||| ||| | |||||||||||||| |||||||||||||||| |
|
|
| T |
24993482 |
tcaattcctaagaacaaatccatcaaattttaagcttcaaatatagctggtccaaataacctag |
24993419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University