View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20890_high_7 (Length: 252)
Name: NF20890_high_7
Description: NF20890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20890_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 31127855 - 31128073
Alignment:
| Q |
18 |
gataaaggggttgagccagagttcgctgcacaccttacttcgataatgaaaggtggcttcccggtaaagattgagaagcgtggcagcacaaatgaatgaa |
117 |
Q |
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| T |
31127855 |
gataaaggggttgagccggagttcgctgcacaccttacttcgataatgaaaggtggcttcctggtaaagattgagaagcgtggcagcacaaatgaatgaa |
31127954 |
T |
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| Q |
118 |
atcttattttatgcataaactaaggttgtgtaggtaattttgtagtttacatttctcgtctaaattaagaataaaattatgacttttattatttaatgga |
217 |
Q |
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| T |
31127955 |
atcttattttatgcataaactaaggttgtgtaggtaattttgtagtttacatttctcgtctaaattaagaataaaattatgacttttattatttaatgga |
31128054 |
T |
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| Q |
218 |
aattatttcaatctgtgct |
236 |
Q |
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| T |
31128055 |
aattatatcaatctgtgct |
31128073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 31078537 - 31078616
Alignment:
| Q |
18 |
gataaaggggttgagccagagttcgctgcacaccttacttcgataatgaaaggtggcttcccggtaaagattgagaagcg |
97 |
Q |
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| T |
31078537 |
gataaaggggttgagccggagtacattgcacaccttacctcattgatgaaaggtggcttctcggtaagaattgagaagcg |
31078616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 31132570 - 31132645
Alignment:
| Q |
22 |
aaggggttgagccagagttcgctgcacaccttacttcgataatgaaaggtggcttcccggtaaagattgagaagcg |
97 |
Q |
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|||||||||| |||| ||| | | |||| |||||||| || |||||||||||||| ||||||||||| ||||||| |
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| T |
31132570 |
aaggggttgaaccagtgtttgattcacatcttacttcaattatgaaaggtggctttccggtaaagatcaagaagcg |
31132645 |
T |
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