View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20890_low_1 (Length: 382)
Name: NF20890_low_1
Description: NF20890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20890_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 6e-90; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 125 - 364
Target Start/End: Original strand, 22621808 - 22622029
Alignment:
| Q |
125 |
tcacaattaaaatttatacagattagttggtatcttgattaacaaggtctaaatttgaacacaacaaaattagacaacctgaagaatgagagagtttgag |
224 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
22621808 |
tcacaattacaatttatacagattagttggtatcttgattaacaaggtctaaatt-----acaacaaaattagacaacctgaagaatgagagagtttgag |
22621902 |
T |
|
| Q |
225 |
gtaataagctctacctaaattccataacaagacacaaacatcaaccagaagtaaaaacaaatggagtaaccgatgaaagtaataactatctcttgccact |
324 |
Q |
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||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22621903 |
gtaataatctcta-------------acaagacacaaacatcaaccagaagtaaaaacaaatggagtaaccgatgaaagtaataactatctcttgccact |
22621989 |
T |
|
| Q |
325 |
gtattatctttagatctttctgttgttaacaaagtaagaa |
364 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
22621990 |
gtattatctttagatctttctgttgttaacaaagtaagaa |
22622029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 125 - 364
Target Start/End: Original strand, 20011693 - 20011914
Alignment:
| Q |
125 |
tcacaattaaaatttatacagattagttggtatcttgattaacaaggtctaaatttgaacacaacaaaattagacaacctgaagaatgagagagtttgag |
224 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
20011693 |
tcacaattacaatttatacagattagttggtatcttgattaacaaggtctaaatt-----acaacaaaattagacaacctgaagaatgagagagtttgag |
20011787 |
T |
|
| Q |
225 |
gtaataagctctacctaaattccataacaagacacaaacatcaaccagaagtaaaaacaaatggagtaaccgatgaaagtaataactatctcttgccact |
324 |
Q |
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| T |
20011788 |
gtaataatctcta-------------acaagacacaaacatcaaccagaagtaaaaacaaatggagtaaccgatgaaagtaataactatctcttgccact |
20011874 |
T |
|
| Q |
325 |
gtattatctttagatctttctgttgttaacaaagtaagaa |
364 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||| |
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| T |
20011875 |
gtattatctctagatctttctgttgttaacaaagtaagaa |
20011914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 198 - 368
Target Start/End: Original strand, 2466891 - 2467065
Alignment:
| Q |
198 |
acaacctgaagaatgagagagtttgaggtaataagctctacctaa----attccataacaagacacaaacatcaaccagaagtaaaaacaaatggagtaa |
293 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2466891 |
acaacctgaagaattagagagtttgaggtaataagctctacctaattaaattccataacaagacacaaacatcaaccagaagtaaaaacaaatggagtaa |
2466990 |
T |
|
| Q |
294 |
ccgatgaaagtaataactatctcttgccactgtattatctttagatctttctgttgttaacaaagtaagaataat |
368 |
Q |
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|
| T |
2466991 |
ccgatgaaagtaataactatctcttgccactgtattatctttagatctttctgttgttaacaaagtaagaataat |
2467065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 2465602 - 2465701
Alignment:
| Q |
18 |
ctttggtggagtttggttgatttgttctgttcggcggtaagtcacacattttggggttttctagcttagtttgcttcaattcgtgttattggtatatttg |
117 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2465602 |
ctttggtggagtttggttgatttgttctgttcggtggtaagtcacacattttggggttttctagcttagtttgcttcaattcgtgttattggtatatttg |
2465701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 363
Target Start/End: Original strand, 43692743 - 43692815
Alignment:
| Q |
291 |
taaccgatgaaagtaataactatctcttgccactgtattatctttagatctttctgttgttaacaaagtaaga |
363 |
Q |
| |
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||||| ||||||||| || |||| ||| ||| || ||| |||||||| |||||| ||||||||||||||||| |
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| T |
43692743 |
taaccaatgaaagtagtagctatatctggccgttgaattttctttagagctttctattgttaacaaagtaaga |
43692815 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 163; Significance: 6e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 125 - 364
Target Start/End: Original strand, 15157284 - 15157506
Alignment:
| Q |
125 |
tcacaattaaaatttatacagattagttggtatcttgattaacaaggtctaaatttgaacacaacaaaattagacaacctgaagaatgagagagtttgag |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
15157284 |
tcacaattaaaatttatacagattagttggtatcttgattaacaaggtctaaatt-----acaacaaaattagacaacctgaagaatgagagagtttgag |
15157378 |
T |
|
| Q |
225 |
gtaataagctctacctaaattccataacaagacacaaacatcaaccagaagtaaaaacaaatggagtaaccgatgaaagtaataactatctcttgccact |
324 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| || |
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| T |
15157379 |
gtaataatctctacctaaattccataacaagacacaaacatc------------agacaaatggagtaaccgatgaaagtaataactatctcttgccgct |
15157466 |
T |
|
| Q |
325 |
gtattatctttagatctttctgttgttaacaaagtaagaa |
364 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
15157467 |
gtattaactttagatctttctgttgttaacaaagtaagaa |
15157506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 5e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 125 - 364
Target Start/End: Complemental strand, 25548839 - 25548622
Alignment:
| Q |
125 |
tcacaattaaaatttatacagattagttggtatcttgattaacaaggtctaaatttgaacacaacaaaattagacaacctgaagaatgagagagtttgag |
224 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
25548839 |
tcacaattacaatttatacagattagttggtatcttgattaaaaaggtctaaatt-----acaacaaaattagacaacctgaagaatgagagagtttgag |
25548745 |
T |
|
| Q |
225 |
gtaataagctctacctaaattccataacaagacacaaacatcaaccagaagtaaaaacaaatggagtaaccgatgaaagtaataactatctcttgccact |
324 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25548744 |
gtaataatctcta-------------acaagacacaaacatcaaccagaa----aaacaaatggagtaaccgatgaaagtaataactatctcttgccact |
25548662 |
T |
|
| Q |
325 |
gtattatctttagatctttctgttgttaacaaagtaagaa |
364 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
25548661 |
gtattatctttagatctttttgttgttaacaaagtaagaa |
25548622 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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