View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20890_low_10 (Length: 213)
Name: NF20890_low_10
Description: NF20890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20890_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 27 - 196
Target Start/End: Original strand, 2431076 - 2431259
Alignment:
| Q |
27 |
gatggcaatgtgcttctttgtgacctcatgataacgtgggta-------gcattaattttcaa-------agagtactagtaactctcaagtgataaaca |
112 |
Q |
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| T |
2431076 |
gatggcaatgtgcttctttgtgacctcatgataacgtgagtactgagtagcattaattttcaatttatgaagagcaccagtaactctcaagtgataaaca |
2431175 |
T |
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| Q |
113 |
cagaggctgaaaatccgagtggtaaaataaatcttctgaacaaaaaagtgaaaaacagtcatccatattggtagacataactat |
196 |
Q |
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| T |
2431176 |
cagaggctgaaaatccgagtggtaaaataaatcttctgaacaaaaaagtgaaaaacagtcatccatattggtagacataactat |
2431259 |
T |
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