View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20890_low_11 (Length: 208)
Name: NF20890_low_11
Description: NF20890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20890_low_11 |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 5e-92; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 33416188 - 33416366
Alignment:
| Q |
16 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33416188 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaa |
33416287 |
T |
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| Q |
116 |
cagtgatcagctacgccacaaacataccactttcttccttcagtttttagttgaatgatatcctttccggtagaaagtg |
194 |
Q |
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| T |
33416288 |
cagtgatcagcaactccacaaacataccactttcttccttcagtttttagttgaatgatatcctttccggtagaaagtg |
33416366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 33410339 - 33410517
Alignment:
| Q |
16 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33410339 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaa |
33410438 |
T |
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| Q |
116 |
cagtgatcagctacgccacaaacataccactttcttccttcagtttttagttgaatgatatcctttccggtagaaagtg |
194 |
Q |
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| T |
33410439 |
cagtgatcagcaactccacaaacataccactttcttccttctgtttttagttgaatgatatcctttcctgtagaaagtg |
33410517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 33424241 - 33424419
Alignment:
| Q |
16 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33424241 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaa |
33424340 |
T |
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| Q |
116 |
cagtgatcagctacgccacaaacataccactttcttccttcagtttttagttgaatgatatcctttccggtagaaagtg |
194 |
Q |
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| T |
33424341 |
cagtgatcagcaactccacaaacataccactttcttccttctgtttttagttgaatgatatcctttcctgtagaaagtg |
33424419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 33436393 - 33436571
Alignment:
| Q |
16 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaa |
115 |
Q |
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|||||| |||| ||||||||||| |||||| || || || |||||||||||||| ||||| ||||||||||||||||| || ||||||||| |||| ||| |
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| T |
33436393 |
agatgatacaatagagtgagcattagaagatggaggaggggaaggagcaggtgcgccttctgctagaacagtgatgacaaatttcatttgatgagcagaa |
33436492 |
T |
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| Q |
116 |
cagtgatcagctacgccacaaacataccactttcttccttcagtttttagttgaatgatatcctttccggtagaaagtg |
194 |
Q |
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|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||| |
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| T |
33436493 |
caatgatcagctacgccacaaacataccactttcttccttctgtttttagttgaatgatatcctttcccgtagagagtg |
33436571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 33428351 - 33428170
Alignment:
| Q |
13 |
cacagatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagcc |
112 |
Q |
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|||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||| ||| |||||||||||||||| |||||||| |||||||| |
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| T |
33428351 |
cacagatgaaacaacagaatgagcatcagaagaaggtggaagagaaggagcaggggcactttctgctagaacagtgatgatgaacttcatgtgacgagca |
33428252 |
T |
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| Q |
113 |
gaacagtgatcagctacgccacaaacataccactttcttccttcagtttttagttgaatgatatcctttccggtagaaagtg |
194 |
Q |
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||||||| |||||||| ||||||||||||||||||| || ||||||| ||||| |||| |||||||||||||||||||||| |
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| T |
33428251 |
gaacagttatcagctatgccacaaacataccactttgtttcttcagtctttaggggaataatatcctttccggtagaaagtg |
33428170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 5384 - 5206
Alignment:
| Q |
16 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaa |
115 |
Q |
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|||||| |||| ||||||||||| |||||| || || | |||||||||| ||| ||||| ||||||||||||||||| ||||| |||||| |||| ||| |
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| T |
5384 |
agatgatacaatagagtgagcattagaagatggaggagtggaaggagcagatgcgccttctgctagaacagtgatgacaaactttatttgatgagcagaa |
5285 |
T |
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| Q |
116 |
cagtgatcagctacgccacaaacataccactttcttccttcagtttttagttgaatgatatcctttccggtagaaagtg |
194 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5284 |
caatgatcagctacgccacaaacataccactttcttccttcagtttttagttgaatgatatcctttcctgtagaaagtg |
5206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 55 - 194
Target Start/End: Complemental strand, 24985253 - 24985114
Alignment:
| Q |
55 |
agaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaacagtgatcagctacgccacaaacataccactttcttcct |
154 |
Q |
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|||||| | |||||||||||| |||| ||| ||||||| | ||||||||||||||| | || |||| || ||||| |||||||||||||||||| |
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| T |
24985253 |
agaaggcgaaggtgcaccttcttctagtacattgatgacaagcttcatttgacgagcagcgcaatgatttgcctttccacatacataccactttcttcct |
24985154 |
T |
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| Q |
155 |
tcagtttttagttgaatgatatcctttccggtagaaagtg |
194 |
Q |
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| T |
24985153 |
tcggttttcagttgaataacgtcctttccggtggaaagtg |
24985114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 55 - 194
Target Start/End: Complemental strand, 24991083 - 24990944
Alignment:
| Q |
55 |
agaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaacagtgatcagctacgccacaaacataccactttcttcct |
154 |
Q |
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|||||| | |||||||||||| |||| ||| ||||||| | ||||||||||||||| | || |||| || ||||| |||||||||||||||||| |
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| T |
24991083 |
agaaggcgaaggtgcaccttcttctagtacattgatgacaagcttcatttgacgagcagcgcaatgatttgcctttccacatacataccactttcttcct |
24990984 |
T |
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| Q |
155 |
tcagtttttagttgaatgatatcctttccggtagaaagtg |
194 |
Q |
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| T |
24990983 |
tcggttttcagttgaataacgtcctttccggtggaaagtg |
24990944 |
T |
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