View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20890_low_3 (Length: 326)
Name: NF20890_low_3
Description: NF20890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20890_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 213 - 307
Target Start/End: Complemental strand, 13519145 - 13519051
Alignment:
| Q |
213 |
attaacaaactaagcctcataaatcatcaacaacaaaatgaaccctcaaacatttttaatactcaaacaatagaagatgaattagaagacaagag |
307 |
Q |
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| T |
13519145 |
attaacaaactaagcctcataaatcatcaacaacaaaatgaaccctcaaacatttttaatactcaaacaatagaagatgaattagaagacaagag |
13519051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 213 - 307
Target Start/End: Complemental strand, 13608678 - 13608584
Alignment:
| Q |
213 |
attaacaaactaagcctcataaatcatcaacaacaaaatgaaccctcaaacatttttaatactcaaacaatagaagatgaattagaagacaagag |
307 |
Q |
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| T |
13608678 |
attaacaaactaagcctcataaatcatcaacaacaaaatgaaccctcaaacatttttaatactcaaacaatagaagatgaattagaagacaagag |
13608584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 13519351 - 13519258
Alignment:
| Q |
1 |
tacaatatcaaactaacattcacactatgacagatcctcaatcaaatctttttgatgaatggttcaacttcatgctccttaaccctcatcatca |
94 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13519351 |
tacaatatcaaactaacattcacactatgacagatcctcaatcaaatctttttgatgaatggttcaacttcatgctccttaaccctcatcatca |
13519258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 13608884 - 13608791
Alignment:
| Q |
1 |
tacaatatcaaactaacattcacactatgacagatcctcaatcaaatctttttgatgaatggttcaacttcatgctccttaaccctcatcatca |
94 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13608884 |
tacaatatcaaactaacattcacactatgacagatcctcaatcaaatctttttgatgaatggttcaacttcatgctccttaaccctcatcatca |
13608791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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