View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20890_low_4 (Length: 317)
Name: NF20890_low_4
Description: NF20890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20890_low_4 |
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| [»] scaffold2079 (1 HSPs) |
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Alignment Details
Target: scaffold2079 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 857 - 555
Alignment:
| Q |
1 |
ccaacttcattcaatctagaaagggttgaataaataaaatattagaagaaacagagtaagttaatgtttgagtagtgattgaaaattgaagttatttacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
857 |
ccaacttcattcaatctagaaagggttgaataaataaaatattagaagaaacagagtaagttaatgtttgagtagtgattgaaaattgaagttatttacc |
758 |
T |
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| Q |
101 |
ttgttgaatctgatgaagttgaagttgcatttggaattgtagctcctaattctgccattgttcttcagactaaacttttg---atgagtacaacacatgc |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||| | |
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| T |
757 |
ttgttgaatctgatgaagttgaagttgcatttggaattgtagctcctaattctgccattgttcttcaaactcaacttttgatgatgagtacaacacattc |
658 |
T |
|
| Q |
198 |
ttcaatattgcttt--tagagttgaggtttggaaaaagagctatgaagaaaaaacatggaaaaggagctatgaaacaatttgcatgagacagtgacccat |
295 |
Q |
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|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
657 |
ttcaatattgcttttatagagtcgaggtttggaaaaagagctatgaagaaaaaacatggaaaaggagctatgaaacaatttgcatgagacagtgacccat |
558 |
T |
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| Q |
296 |
aaa |
298 |
Q |
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||| |
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| T |
557 |
aaa |
555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 126; Significance: 6e-65; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 80 - 295
Target Start/End: Original strand, 6333713 - 6333942
Alignment:
| Q |
80 |
tgaaaattgaagttatttaccttgttgaatctgatgaagttgaagttgcatttggaatt------gtagctcctaattctgccattgttcttcagactaa |
173 |
Q |
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| T |
6333713 |
tgaaaattgaagttatttaccttgttgaagctgatgaagttgaagttgcatttggaattgtaattgtagctcctaattcagccattgttcttcaaactaa |
6333812 |
T |
|
| Q |
174 |
acttttgatgagtacaacacatgcttcaatattgctttt--------agagttgaggtttggaaaaagagctatgaagaaaaaacatggaaaaggagcta |
265 |
Q |
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| T |
6333813 |
acttttgatgagtacaacacattcttcaatattgcttttcttatataatagttgagttttggaaaaagagatatgaagaaaaaacagggaaaaagaggta |
6333912 |
T |
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| Q |
266 |
tgaaacaatttgcatgagacagtgacccat |
295 |
Q |
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||| |||||||| |||||| |||||||||| |
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| T |
6333913 |
tgacacaatttggatgagaaagtgacccat |
6333942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 63 - 228
Target Start/End: Complemental strand, 6242582 - 6242409
Alignment:
| Q |
63 |
aatgtttgagtagtgattgaaaattgaagttatttaccttgttgaatctgatgaagttgaagtt------gcatttggaattgtagctcctaattctgcc |
156 |
Q |
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| T |
6242582 |
aatgtttgagtagtgattgaaaattgaagttatttaccttattgaatccgatgaagttcaagttcaagttgcatttggaattgtagctcctaattctgcc |
6242483 |
T |
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| Q |
157 |
attgttcttcagactaaacttttgatgagtacaacacatgcttcaatattgcttt--tagagttgaggtttgga |
228 |
Q |
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| T |
6242482 |
gttgttcttcaaacttaacttttgataagtacaacacattcttcaatattgcttttatagagttgaggtttgga |
6242409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 48 - 212
Target Start/End: Original strand, 6326201 - 6326368
Alignment:
| Q |
48 |
gaaacagagtaagttaatgtttgagtagtgattgaaaattgaagttatttaccttgttgaatctga------tgaagttgaagttgcatttggaattgta |
141 |
Q |
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| T |
6326201 |
gaaacagagtaagttaatgtttgagtagtgattgaaaattgaagttatttaccttgttgaagctgatgaagttgaagttgaagttgcatttgcaattgta |
6326300 |
T |
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| Q |
142 |
gctcctaattctgccattgttcttcagactaaacttttgatgagtacaacacatgcttcaatattgctttt |
212 |
Q |
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||| ||||||| |||||||||| | | ||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
6326301 |
gcttctaattcagccattgttcgttaaact---cttttgatgagtacaacacattcttcaatattgctttt |
6326368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 148 - 207
Target Start/End: Complemental strand, 6220993 - 6220934
Alignment:
| Q |
148 |
aattctgccattgttcttcagactaaacttttgatgagtacaacacatgcttcaatattg |
207 |
Q |
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| T |
6220993 |
aattctgccattgttcttcaaactcaacttttgatgagtacaacacatgcttcaatattg |
6220934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 295
Target Start/End: Complemental strand, 6242411 - 6242375
Alignment:
| Q |
259 |
ggagctatgaaacaatttgcatgagacagtgacccat |
295 |
Q |
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| T |
6242411 |
ggagctatgaaacaatttggatgagacagtgacccat |
6242375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 6242631 - 6242601
Alignment:
| Q |
1 |
ccaacttcattcaatctagaaagggttgaat |
31 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
6242631 |
ccaacttcattcaatctagaaagggttgaat |
6242601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 6346643 - 6346677
Alignment:
| Q |
1 |
ccaacttcattcaatctagaaagggttgaataaat |
35 |
Q |
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|||||||||||||| |||||||||||||||||||| |
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| T |
6346643 |
ccaacttcattcaagctagaaagggttgaataaat |
6346677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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