View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20890_low_5 (Length: 287)
Name: NF20890_low_5
Description: NF20890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20890_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 16 - 281
Target Start/End: Complemental strand, 11617010 - 11616745
Alignment:
| Q |
16 |
attttaatgtccttgtttcgtccaagcatcctaacattgatcttcctttccgaacaaaaatcctagttttgagctgcaactcttgtaactttgttgcaca |
115 |
Q |
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| T |
11617010 |
attttaatgtccttgtttcatccaagcatcctaacattgatcttcctttccgaacaaaaatcctagttttgagctgcaactcttgtaactttgttgcaca |
11616911 |
T |
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| Q |
116 |
tattgttctcaacatcacggaaagaaaaggttcatttgtcggattgaatccacaaataatcatttcccttaacatgtctgtaattgttccttgtgacatc |
215 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11616910 |
tattgttctcaacatcatggaaagaaaaggttcatttgtcggattgaatccacaaataatcatttcccttaacatgtctgtaattgttccttgtgacatc |
11616811 |
T |
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| Q |
216 |
atgtctagtgcattgaatggttttcttgatatcattttgagtttattaacaatctccctttgcttc |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11616810 |
atgtctagtgcattgaatggttttcttgatatcattttgagtttattaacaatctccctttgcttc |
11616745 |
T |
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