View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20891_high_1 (Length: 613)
Name: NF20891_high_1
Description: NF20891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20891_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 554; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 17 - 602
Target Start/End: Complemental strand, 9212691 - 9212106
Alignment:
| Q |
17 |
aaaaatatggccgcctttgacattagataagcaaacaaacatataatgacaccaaattctaaagaatattttgtagatcactttatttaattgttgaaac |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9212691 |
aaaaatatggccgcctttgacattagataagcaaacaaacatataatgacaccaaattctaaagaatattttgtagatcactttatttaattgttgaaac |
9212592 |
T |
|
| Q |
117 |
taagtattcaagtgctccaatttgtatttttattccaattgacattatccaaactatgatacacaccatcttcccttgctgaccaatagattttttgatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
9212591 |
taagtattcaagtgctccaatttgtatttttattccaattgacattatccaaactatgatacacaccatcttcccttgctgaccaatagatttttttatt |
9212492 |
T |
|
| Q |
217 |
gtctccttctacgttaggatcatagaagttgaatgttgcatgtagtggttgttgacgcacccatgtcatctcagcttgtcttggtacaaagttggaaaag |
316 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9212491 |
gtctccttctacgttaggatcatacaagttgaatgttgcatgtagtggttgttgacgcacccatgtcatctcagcttgtcttggtacaaagttggaaaag |
9212392 |
T |
|
| Q |
317 |
aaaactataggagctcctcttttcaaaacgttccttgggttttcattgataatatggaagtataactctcctgaattttctggtaaatcattttcaaccg |
416 |
Q |
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||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9212391 |
aaaactacaggagctcctcttttcaaaacgttccttggtttttcattgataatatggaagtataactctcctgaattttctggtaaatcattttcaaccg |
9212292 |
T |
|
| Q |
417 |
agagtaaaagtattttttctggtggaggttcagtggggagtgaaatagaggctctactaccaaaagttgaattattgaaacacataataatcacaagtag |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9212291 |
agagtaaaagtattttttctggtggaggttcagtggggagtgaaatagaggctctactaccaaaagttgaattattgaaacacataataatcacaagtag |
9212192 |
T |
|
| Q |
517 |
tagcaagaaggatacatggtttgaagtggacattttgtttgatgatgagaggcttttaagtttcaacaattgttattgatttctct |
602 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
9212191 |
tagcaacaaagatacatggtttgaagtggacattttgtttgatgatgacaggcttttaagtttcaacaattgctattgatttctct |
9212106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 119 - 555
Target Start/End: Original strand, 9892629 - 9893065
Alignment:
| Q |
119 |
agtattcaagtgctccaatttgtatttttattccaattgacattatccaaactatgatacacaccatcttcccttgctgaccaatagattttttgattgt |
218 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||| |||||||||| ||| |||||||| | ||||||| || || |
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| T |
9892629 |
agtattcaagtgctccattttgtatttttattccaattgacattatcccagctatgatatacaccatcttgcctcactgaccaaaatatttttttatggt |
9892728 |
T |
|
| Q |
219 |
ctccttctacgttaggatcatagaagttgaatgttgcatgtagtggttgttgacgcacccatgtcatctcagcttgtcttggtacaaagttggaaaagaa |
318 |
Q |
| |
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|||||||| |||||||||||| ||||||||||||||||||| |||||||| ||| | |||||||| | | ||||| |||| | |||||||| ||||| |
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| T |
9892729 |
ctccttctgtgttaggatcatacaagttgaatgttgcatgtaatggttgtttacgtatccatgtcaattgaccttgttttggcaaaaagttggtcaagaa |
9892828 |
T |
|
| Q |
319 |
aactataggagctcctcttttcaaaacgttccttgggttttcattgataatatggaagtataactctcctgaattttctggtaaatcattttcaaccgag |
418 |
Q |
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| | ||| ||||| ||||||||| | | || |||||||| | ||| ||| | ||||||| |||||||||| || |||||||||||||| || |
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| T |
9892829 |
attcaaaggtactccttgtttcaaaacataattaggtttttcattcacaatgatgaaatgtaactcttctgaattttcaggcaaatcattttcaacaaag |
9892928 |
T |
|
| Q |
419 |
agtaaaagtattttttctggtggaggt---tcagtggggagtgaaatagaggctctactaccaaaagttgaattattgaaacacataataatcacaagta |
515 |
Q |
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|| |||||| |||||||| |||||| ||| | | |||| ||||| ||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
9892929 |
agggaaagtactttttctgcaggaggtcgttcataag--attgaa-tagagactctactaccaaaagttgaattattgaaagacataacaatcacaagta |
9893025 |
T |
|
| Q |
516 |
gtagcaagaaggatacatggtttgaagtggacattttgtt |
555 |
Q |
| |
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|| | |||| ||| ||| ||||| | ||||||||||| |
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| T |
9893026 |
ataacgagaaagatttatgaattgaaatagacattttgtt |
9893065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 455 - 560
Target Start/End: Original strand, 7250351 - 7250456
Alignment:
| Q |
455 |
agtgaaatagaggctctactaccaaaagttgaattattgaaacacataataatcacaagtagtagcaagaaggatacatggtttgaagtggacattttgt |
554 |
Q |
| |
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|||| ||||||| |||| || ||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||| | ||| | |||||||||| |
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| T |
7250351 |
agtggaatagagactctgctgccaaaagttaaattattgaaacacatagcaatcaaaagtagtaaaaagaaggatacatggatagaaatagacattttgt |
7250450 |
T |
|
| Q |
555 |
ttgatg |
560 |
Q |
| |
|
|||||| |
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|
| T |
7250451 |
ttgatg |
7250456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 7249928 - 7249995
Alignment:
| Q |
55 |
acatataatgacaccaaattctaaagaatattttgtagatcactttatttaattgttgaaactaagta |
122 |
Q |
| |
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|||||||||| || ||||||||||| | | ||||||| |||||||||||||||||||||||||||||| |
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| T |
7249928 |
acatataatggcatcaaattctaaaaacttttttgtaaatcactttatttaattgttgaaactaagta |
7249995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 469 - 541
Target Start/End: Original strand, 29252803 - 29252875
Alignment:
| Q |
469 |
tctactaccaaaagttgaattattgaaacacataataatcacaagtagtagcaagaaggatacatggtttgaa |
541 |
Q |
| |
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|||||| ||||| ||||||||| ||||||||||| |||||||||||||| |||||||||||||||| ||||| |
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| T |
29252803 |
tctactgccaaaggttgaattactgaaacacatagcaatcacaagtagtaacaagaaggatacatggattgaa |
29252875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 29252553 - 29252606
Alignment:
| Q |
69 |
caaattctaaagaatattttgtagatcactttatttaattgttgaaactaagta |
122 |
Q |
| |
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||||||||||| | ||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
29252553 |
caaattctaaatactattttgtaaatcactttatttaattgttgaaactaagta |
29252606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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