View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20891_high_3 (Length: 328)
Name: NF20891_high_3
Description: NF20891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20891_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 19 - 318
Target Start/End: Original strand, 54637017 - 54637316
Alignment:
| Q |
19 |
gatggtatcagcaagtctgcatagatgaataagagcccaatcaaaagcatgtttactgtttggaccatgatctatggctaatactatatcccttcctctt |
118 |
Q |
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| T |
54637017 |
gatggtatcagcaagtctgcatagatgaataagagcccaatcaaaagcatgtttactgtttggaccatgatctatggctaatactatatcccttcctctt |
54637116 |
T |
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| Q |
119 |
cttctttcccctgtttccctctcaagctctggctcaggcactattggtatcagagatggaagcttcacttctctgtagttgtattcttctacatcttcca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54637117 |
cttctttcccctgtttccctctcaagctctggctcaggcactattggtatcagagatggaagcttcacttctctgtagttgtattcttctacatcttcca |
54637216 |
T |
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| Q |
219 |
tcactgtctccattaatttacaatcttcacaacttcttggattatgaactttgcnnnnnnnctttctttctgattatctctctactcaaactttcctatg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
54637217 |
tcactgtctccattaatttacaatcttcacaacttcttggattatgaactttgctttttttctttctttctgattatctctctactcaaactttcatatg |
54637316 |
T |
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