View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20891_high_5 (Length: 300)
Name: NF20891_high_5
Description: NF20891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20891_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 43805905 - 43806180
Alignment:
| Q |
1 |
attgacaaggggaagcaacatagcctctatctgcaaactttcttggaaggatttctgaatcttcaatgcaccttttttgtcaatgcttctttactaaaaa |
100 |
Q |
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| T |
43805905 |
attgacaaggggaagcaacatagcctctatctgcaacctttcttggaaggatttctgaatcttcaatgcaccttttttgtcaatgcttctttactaaaaa |
43806004 |
T |
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| Q |
101 |
catttggaaccttcaatgcaagttagccatccttacctccataactaacattttcaatatcatttggtatagtagaaaccagttgagattcaataacaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43806005 |
catttggaaccttcaatgcaagttagccatccttacctccataactaacattttcaatatcatttggtatagtagaaaccagttgagattcaataacaaa |
43806104 |
T |
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| Q |
201 |
tcagtgcattggagaactgccatggtcatctcacacacttctctctctctggaatgaaacaaaataatatagatagat |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
43806105 |
tcagtgcattggagaactgccatggtcatctcacacact--tctctctctgcaatgaaacaaaataatatagatagat |
43806180 |
T |
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